CB304861

Overview
NameCB304861
Unique NameCB304861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:453..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.516e-14
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FGS E   ++ +A    L GSGW WL +D + K  + +     +P+      L PLLG DVWEHAYYL Y+N + D++  +W +++W    DV +K
Sbjct:  103 FGSFENFKKEFNAASVGLFGSGWAWLSVDKDGKLHITKEPNGSNPV---RAGLKPLLGFDVWEHAYYLDYQNRRADHVNKLWEIIDW----DVVEK 191          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = -2
Query:  316 GSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 531
            GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct:  120 GSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 188          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 588
            +GS +A  + ++ +     GS W WL    +    +V T+    PL     T  P+L +D+WEHAYY+ Y+NV+PDYLK  W+++NW++A+
Sbjct:  100 WGSFDAFKEALNDKAVNNFGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVT--PILTVDLWEHAYYIDYRNVRPDYLKGFWSLVNWEFAN 188          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = -2
Query:  316 GSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 531
            GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct:  120 GSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 188          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = -2
Query:  316 GSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 531
            GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct:  120 GSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 188          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.898e-14
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = -2
Query:  316 GSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 531
            GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY+ Y+N +P YL++ W ++NW++ +
Sbjct:  120 GSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVA 188          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_BUCAP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sodA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 588
            FGS+E    K         GSGW+WL        +V  +T NQD PL+ K+ +     P+ G+D+WEHAYYL+Y+N + DY+K+ WNV+NW  AS
Sbjct:  106 FGSVEYFKSKFEDIALNHFGSGWIWLVNQNGILSIV--STINQDNPLMGKSISGTHGNPIFGLDLWEHAYYLKYQNRRLDYIKSFWNVVNWDEAS 198          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM2_BACCR (Superoxide dismutase [Mn] 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = -2
Query:  307 HFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 591
            +F + + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYYL+Y+N +P+++ N W+ +NW   ++ Y
Sbjct:  109 YFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTVNWDQVNEKY 199          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 42/95 (44.21%), Postives = 51/95 (53.68%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-VWNVMNWKYASDVY 588
            FGS E  + +     A   GSGW WL LD     L +  T N D  +    T  PLL IDVWEHAYYL Y+N +PDY+   V  + NW +AS  Y
Sbjct:  106 FGSFENFVTEFKQAAATQFGSGWAWLVLDNG--TLKITKTGNADTPIAHGQT--PLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANY 196          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 588
            FGS  A  ++ S   A   GSGW WL  D      ++ T+    P+      L  LL  DVWEHAYY+ Y+N +PDY++  W+++NW +AS
Sbjct:  101 FGSFAAFKEQFSQTAATTFGSGWAWLVQDQSGALKIINTSNAGTPMTEG---LNALLTCDVWEHAYYIDYRNRRPDYIEAFWSLVNWDFAS 188          
The following BLAST results are available for this feature:
BLAST of CB304861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SODF_BACFR4.516e-1438.54Superoxide dismutase [Fe] OS=Bacteroides fragilis ... [more]
SODF_SHIFL5.898e-1444.44Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]
SODF_PSEHT5.898e-1437.36Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODF_ECOLI5.898e-1444.44Superoxide dismutase [Fe] OS=Escherichia coli (str... [more]
SODF_ECOL65.898e-1444.44Superoxide dismutase [Fe] OS=Escherichia coli O6 G... [more]
SODF_ECO575.898e-1444.44Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]
SODM_BUCAP1.314e-1343.16Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODM2_BACCR1.314e-1340.00Superoxide dismutase [Mn] 2 OS=Bacillus cereus (st... [more]
SODF_SYNE71.314e-1344.21Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_LEGPH1.314e-1339.56Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304861 ID=CB304861; Name=CB304861; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACCCAATCATACATATT
CACAGATCCGTGCTCATAGTGAGATACAAAAAGAGCATAAACCCCAATAT
TATTTTGGATGTCACATAAGGGATACACAAGTAACACTCACTGCAAAAGA
AAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTATTGTCACTTCAGCG
TGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAAGAGAGAACCCAGAT
CAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAAGCTTAAGGGCATTC
TTTCTGATACACATCACTAGCATACTTCCAGTTCATTACGTTCCAAACGT
TTTTCAGATAATCTGGTTTGACATTCTTGTACTGTAGGTAGTATGCATGC
TCCCAAACATCTATACCAAGCAAAGGAACCAGAGTTGGGGCTTTAGTCAC
CAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAGCCTTTTGAACTCTG
TATCTAAACCAAGCCACACCCATCCAGAGCCCTGCAAAGCTGCACCCTCA
GCACTCATCTTTTGTATCAATGCTTCCAGAGAACCAAAATGC
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