CB304861

Overview
NameCB304861
Unique NameCB304861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:453..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM2_BACAN (Superoxide dismutase [Mn] 2 OS=Bacillus anthracis GN=sodA2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = -2
Query:  307 HFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 591
            +F + + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYYL+Y+N +P+++ N W+ +NW   ++ Y
Sbjct:  109 YFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTVNWDRVNEKY 199          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_PLAVI (Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:  101 FGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_PLAFX (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3) GN=SODB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:  101 FGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_PLAFA (Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:  101 FGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_PLAF7 (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7) GN=SODB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:  101 FGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = -2
Query:  307 GSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 585
            G  EA     +       GSGW WL + T    L+VE++ NQD  +    T  P+LG+DVWEHAYYL+Y+N +P+Y+   +NV++W+  +  Y
Sbjct:  109 GGFEAFKDAFTKAALTRFGSGWAWLSV-TPQGSLLVESSGNQDSPLMNGNT--PILGLDVWEHAYYLKYQNRRPEYIGAFYNVIDWREVARRY 198          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = -2
Query:  304 GSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-VWNVMNWKYASDVYQ 585
            G  +      SA GA   GSGW WL +    K  + +T   ++PLV  A    P+LG+DVWEH+YY+ Y+N +P YL+  V N++NW Y  ++Y+
Sbjct:  106 GGYDKFRADFSAAGAGQFGSGWAWLSVKNG-KLEISKTPNGENPLVHGA---TPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYE 196          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  328 GSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNW 585
            G  +A  +  +       GSGW WL + T  K LVVE++ NQD  +    T  P+ G+DVWEHAYYL+Y+N +P+Y+   +NV++W
Sbjct:  109 GGFDAFKEAFTKAALTRFGSGWAWLSV-TPQKTLVVESSGNQDSPLMFGNT--PIFGLDVWEHAYYLKYQNRRPEYIGAFYNVIDW 191          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_BORPE (Superoxide dismutase [Mn] OS=Bordetella pertussis GN=sodA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = -2
Query:  304 GSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQ 531
            GSGW WL + T   RL V+++ANQD  + +  T  P+LG+DVWEHAYYLQY+N +P+Y++  + V++W   +  Y+
Sbjct:  128 GSGWAWLTV-TPAGRLRVDSSANQDSPLMEGNT--PILGLDVWEHAYYLQYQNRRPEYIEAFYRVVDWAEVARRYE 200          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-VWNVMNWKYAS 588
            FGS +A ++     GA   GSGW WL LD     L V  T N +  +T   T  PLL +DVWEHAYYL Y+N +PDY+ + +  ++NW + +
Sbjct:  106 FGSFDAFVEAFKQAGATQFGSGWAWLVLDNG--TLKVTKTGNAENPMTAGQT--PLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVA 193          
The following BLAST results are available for this feature:
BLAST of CB304861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SODM2_BACAN1.716e-1340.00Superoxide dismutase [Mn] 2 OS=Bacillus anthracis ... [more]
SODF_PLAVI1.716e-1336.46Superoxide dismutase [Fe] OS=Plasmodium vivax GN=S... [more]
SODF_PLAFX1.716e-1336.46Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAFA1.716e-1336.46Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAF71.716e-1336.46Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODM_PSEAE2.241e-1339.78Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]
SODF_RHIME2.241e-1340.00Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODM_PSEPU2.927e-1341.86Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]
SODM_BORPE2.927e-1346.05Superoxide dismutase [Mn] OS=Bordetella pertussis ... [more]
SODF_SYNY32.927e-1342.39Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304861 ID=CB304861; Name=CB304861; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACCCAATCATACATATT
CACAGATCCGTGCTCATAGTGAGATACAAAAAGAGCATAAACCCCAATAT
TATTTTGGATGTCACATAAGGGATACACAAGTAACACTCACTGCAAAAGA
AAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTATTGTCACTTCAGCG
TGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAAGAGAGAACCCAGAT
CAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAAGCTTAAGGGCATTC
TTTCTGATACACATCACTAGCATACTTCCAGTTCATTACGTTCCAAACGT
TTTTCAGATAATCTGGTTTGACATTCTTGTACTGTAGGTAGTATGCATGC
TCCCAAACATCTATACCAAGCAAAGGAACCAGAGTTGGGGCTTTAGTCAC
CAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAGCCTTTTGAACTCTG
TATCTAAACCAAGCCACACCCATCCAGAGCCCTGCAAAGCTGCACCCTCA
GCACTCATCTTTTGTATCAATGCTTCCAGAGAACCAAAATGC
back to top