CB304861

Overview
NameCB304861
Unique NameCB304861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:453..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_SULAC (Superoxide dismutase [Fe] OS=Sulfolobus acidocaldarius GN=sod PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 39/96 (40.62%), Postives = 49/96 (51.04%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            +GS +   Q  S    +L GSGW  L  D E   L + T  N    +     L  +L +D +EHAYYLQYKN + DYL   WNV+NW  A    QK
Sbjct:  114 YGSFDRFKQVFSESANSLPGSGWTVLYYDNESGNLQIMTVENH--FMNHIAELPVILIVDEFEHAYYLQYKNKRGDYLNAWWNVVNWDDAEKRLQK 207          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = -2
Query:  313 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NVWNVMNWKYASD 588
            FGS E   ++  AE     GSGW WL       RL +  TAN    +     + PLL  DVWEHAYY+ Y+N +PDY+   + +++NW++  +
Sbjct:  117 FGSFEEFCEQFKAEATGQFGSGWAWLVYHNN--RLQIVKTANAGTPIANG--MQPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWEFVEN 205          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.606e-11
Identity = 34/89 (38.20%), Postives = 46/89 (51.69%), Query Frame = -2
Query:  322 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKY 588
            FGSLE      +       GSGW WL  D   K  V+ T   ++P+        PL+  DVWEHAYY+  +N +P Y+ N W V+NW +
Sbjct:  101 FGSLEKFKALFTDSANNHFGSGWAWLVKDNNGKLEVLSTVNARNPMTEGKK---PLMTCDVWEHAYYIDTRNDRPKYVNNFWQVVNWDF 186          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-VWNVMNWKYAS 588
            FGSL+   ++ S   A   GSGW WL +D      V +T   ++PLV       PLL +DVWEHAYYL ++N +P ++KN + N++NW + +
Sbjct:  107 FGSLDKFKEEFSNAAATQFGSGWAWL-VDDGGTLKVTKTPNAENPLVHGQK---PLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVA 194          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 588
            FGS      K +       GS W WL  +      +V T+    P+  +  T  PLL +D+WEHAYY+ Y+N++P Y+   W ++NW + S
Sbjct:  100 FGSFAEFKAKFTDSAINNFGSSWTWLVKNANGSLAIVNTSNAGCPITEEGVT--PLLTVDLWEHAYYIDYRNLRPSYMDGFWALVNWDFVS 188          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-VWNVMNWKYASDVYQK 588
            FGS + L ++ S   A   GSGW WL +D      V +T   ++PL   A     LL +DVWEHAYY+ ++N +P ++KN + N++NW +A+  Y K
Sbjct:  107 FGSFDKLKEEFSNAAATQFGSGWAWL-IDDGGTLKVTKTPNAENPL---AHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWDFAAANYAK 199          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = -2
Query:  313 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLK-NVWNVMNWKYASD 588
            FGS E   ++   E     GSGWVW+  +   K  +++T+    P+V     + P+L  DVWEHAYY+ Y+N + DY+   + +++NWK+  D
Sbjct:  117 FGSFEQFCEQFKQEALGQFGSGWVWVVYNNN-KLQIIKTSNADTPIVN---LMKPILVCDVWEHAYYIDYRNKRSDYIDIFISHMINWKFVED 205          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODF_BACSU (Probable superoxide dismutase [Fe] OS=Bacillus subtilis GN=sodF PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = -2
Query:  283 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQKECP*AW 588
            FGS  A  +  +     ++G GW  L       RL +  TA +  L ++   ++PLL +DVWEHAYYLQYKN +  Y+ + WNV++W+ A   +++     W
Sbjct:  179 FGSYSAFKEHFTQASKKVEGVGWAILVWAPRSGRLEI-LTAEKHQLFSQWD-VIPLLPLDVWEHAYYLQYKNDRASYVDHWWNVVDWREAEKRFEQAKEVVW 278          
The following BLAST results are available for this feature:
BLAST of CB304861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SODF_SULAC1.230e-1140.63Superoxide dismutase [Fe] OS=Sulfolobus acidocalda... [more]
SODF_RICBR1.230e-1137.63Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_COXBU1.606e-1138.20Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]
SODF_PLEBO2.098e-1140.22Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_PHOLE2.098e-1134.07Superoxide dismutase [Fe] OS=Photobacterium leiogn... [more]
SODF_ANASP2.098e-1139.18Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_RICTY3.578e-1135.48Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODF_BACSU4.674e-1135.29Probable superoxide dismutase [Fe] OS=Bacillus sub... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304861 ID=CB304861; Name=CB304861; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACCCAATCATACATATT
CACAGATCCGTGCTCATAGTGAGATACAAAAAGAGCATAAACCCCAATAT
TATTTTGGATGTCACATAAGGGATACACAAGTAACACTCACTGCAAAAGA
AAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTATTGTCACTTCAGCG
TGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAAGAGAGAACCCAGAT
CAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAAGCTTAAGGGCATTC
TTTCTGATACACATCACTAGCATACTTCCAGTTCATTACGTTCCAAACGT
TTTTCAGATAATCTGGTTTGACATTCTTGTACTGTAGGTAGTATGCATGC
TCCCAAACATCTATACCAAGCAAAGGAACCAGAGTTGGGGCTTTAGTCAC
CAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAGCCTTTTGAACTCTG
TATCTAAACCAAGCCACACCCATCCAGAGCCCTGCAAAGCTGCACCCTCA
GCACTCATCTTTTGTATCAATGCTTCCAGAGAACCAAAATGC
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