CB304861

Overview
NameCB304861
Unique NameCB304861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:453..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+N + DYL+ +WNV+NW  A + ++K
Sbjct:  111 FGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEFFKK 203          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FG  +AL +K++       GSGW WL  D  F +L V +T NQD  V +  T  P++GIDVWEHAYYL+Y+N + DYL+ +WNV+NW  A + ++K
Sbjct:  111 FGGFQALKEKLTQAAMGRFGSGWAWLVKDP-FGKLHVLSTPNQDNPVMEGFT--PIVGIDVWEHAYYLKYQNRRADYLQAIWNVLNWDVAEEFFKK 203          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FGS E    +  A      GSGW WL +D E  +L V +TANQD  +++   L P+LG+DVWEHAYYL+Y NV+PDY++  +N++NW   +++Y K
Sbjct:  112 FGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAK 204          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.772e-18
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = -2
Query:  301 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVYQK 588
            FGS E    +  A      GSGW WL +D E  +L V +TANQD  +++   L P+LG+DVWEHAYYL+Y NV+PDY++  +N++NW   +++Y K
Sbjct:  112 FGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAK 204          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_DEBHA (Probable superoxide dismutase [Mn], mitochondrial OS=Debaryomyces hansenii GN=DEHA2E01232g PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.314e-18
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = -2
Query:  316 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFK-RLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYAS 588
            +GS++ LI   +A+ A++QGSGW ++  + +    L V TT NQD   T    LVPL+ ID WEHAYYLQY+NVK DY K +WNV+NW+ AS
Sbjct:  116 YGSIDNLISITNAKLASIQGSGWAFIVKNKQNGGNLDVVTTYNQD---TVTDPLVPLIAIDAWEHAYYLQYQNVKADYFKAIWNVINWEEAS 204          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM_CORDI (Superoxide dismutase [Mn] OS=Corynebacterium diphtheriae GN=sodA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.314e-18
Identity = 46/87 (52.87%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  328 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNW 588
            FGS E      SA    LQGSGW  LG D    RLV+E   +Q   ++    L PLL +D+WEHA+YLQYKNVK DY+K VWNV NW
Sbjct:  103 FGSFEKFKDHFSAAALGLQGSGWAVLGYDHIGGRLVIEQLTDQQGNISA--NLTPLLMLDMWEHAFYLQYKNVKADYVKAVWNVFNW 187          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.314e-18
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:  106 WGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.314e-18
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:  106 WGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.314e-18
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:  106 WGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CB304861 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.314e-18
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  307 FGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNVWNVMNWKYASDVY 588
            +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:  106 WGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
The following BLAST results are available for this feature:
BLAST of CB304861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
SODM_THET81.772e-1846.88Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET21.772e-1846.88Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_LACLM1.772e-1845.83Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA1.772e-1845.83Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_DEBHA2.314e-1851.09Probable superoxide dismutase [Mn], mitochondrial ... [more]
SODM_CORDI2.314e-1852.87Superoxide dismutase [Mn] OS=Corynebacterium dipht... [more]
SODM1_STAAW2.314e-1845.74Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS2.314e-1845.74Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAR2.314e-1845.74Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAN2.314e-1845.74Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304861 ID=CB304861; Name=CB304861; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACCCAATCATACATATT
CACAGATCCGTGCTCATAGTGAGATACAAAAAGAGCATAAACCCCAATAT
TATTTTGGATGTCACATAAGGGATACACAAGTAACACTCACTGCAAAAGA
AAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTATTGTCACTTCAGCG
TGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAAGAGAGAACCCAGAT
CAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAAGCTTAAGGGCATTC
TTTCTGATACACATCACTAGCATACTTCCAGTTCATTACGTTCCAAACGT
TTTTCAGATAATCTGGTTTGACATTCTTGTACTGTAGGTAGTATGCATGC
TCCCAAACATCTATACCAAGCAAAGGAACCAGAGTTGGGGCTTTAGTCAC
CAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAGCCTTTTGAACTCTG
TATCTAAACCAAGCCACACCCATCCAGAGCCCTGCAAAGCTGCACCCTCA
GCACTCATCTTTTGTATCAATGCTTCCAGAGAACCAAAATGC
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