CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ORYSJ (50S ribosomal protein L14, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I V G          A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG  KG+ + G I +E  +L
Sbjct:    8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELREL 110          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ORYSI (50S ribosomal protein L14, chloroplastic OS=Oryza sativa subsp. indica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I V G          A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG  KG+ + G I +E  +L
Sbjct:    8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELREL 110          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ORYSA (50S ribosomal protein L14, chloroplastic OS=Oryza sativa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I V G          A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG  KG+ + G I +E  +L
Sbjct:    8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELREL 110          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ORYNI (50S ribosomal protein L14, chloroplastic OS=Oryza nivara GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I V G          A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG  KG+ + G I +E  +L
Sbjct:    8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELREL 110          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_NICSY (50S ribosomal protein L14, chloroplastic OS=Nicotiana sylvestris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E  +L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELREL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CUSEX (50S ribosomal protein L14, plastid OS=Cuscuta exaltata GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +++ AVIVR RK  +R +G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAVPNMPLERSELVRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRPL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYNJA (50S ribosomal protein L14 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGA+ L  I V G  GR      A +GD+++  VK   P++  K   V+ AV++R     RR DG+ + F+DNA VI+N  G  +G+ + GP+ +E
Sbjct:   11 ADNTGARKLMCIRVLGSSGRRY----ASLGDVIVGVVKDALPNMPVKKSDVVKAVVIRTVDTVRRPDGMCIRFDDNAAVIINDDGNPRGTRVFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYNAS (50S ribosomal protein L14 OS=Syntrophus aciditrophicus (strain SB) GN=rplN PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + +   +N ADN+GAK +  I V G  G   R   A VGD+++  VK+  P+ + K   VM AVIVR  K  RR+DG ++ F+DN+ V+++ + E  G+ I GP+ +E
Sbjct:    2 IQMQTVLNVADNSGAKKVACIKVLG--GSKRRY--AGVGDVIVVAVKEAMPNSKVKKGDVMKAVIVRTAKEVRRQDGSYLKFDDNSAVLISNQMEPIGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYMTH (50S ribosomal protein L14 OS=Symbiobacterium thermophilum GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  236 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 559
            + V   +  ADNTGAK L  I V G  G   R   A +GD+++ +VK+  P     +  V+ AV+VR +K  RR+DG ++ F++NA VI+    E +G+ I GP+ +E  D
Sbjct:    2 IQVQTRLQVADNTGAKELMCIKVLG--GSWRRY--ANIGDVIVCSVKEASPGGVVKKGDVVRAVVVRTKKGLRREDGSYIRFDENAAVILKDDKEPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PROMS (50S ribosomal protein L14 OS=Prochlorococcus marinus (strain AS9601) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK L  I V G   R      A VGD+++ATVK   P++   + +V+ AVIVR +   RR  G  + F+DNA V++N     KG+ + GP+ +E  D
Sbjct:   11 ADNSGAKRLQCIRVLGSNRRY-----AHVGDVIVATVKDALPNMGVKKSEVVKAVIVRTKATLRRNTGNSIRFDDNAAVLINEDKNPKGTRVFGPVARELRD 107          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RK14_ORYSJ2.259e-1136.7950S ribosomal protein L14, chloroplastic OS=Oryza ... [more]
RK14_ORYSI2.259e-1136.7950S ribosomal protein L14, chloroplastic OS=Oryza ... [more]
RK14_ORYSA2.259e-1136.7950S ribosomal protein L14, chloroplastic OS=Oryza ... [more]
RK14_ORYNI2.259e-1136.7950S ribosomal protein L14, chloroplastic OS=Oryza ... [more]
RK14_NICSY2.259e-1135.8550S ribosomal protein L14, chloroplastic OS=Nicoti... [more]
RK14_CUSEX2.259e-1135.8550S ribosomal protein L14, plastid OS=Cuscuta exal... [more]
RL14_SYNJA2.951e-1139.3950S ribosomal protein L14 OS=Synechococcus sp. (st... [more]
RL14_SYNAS2.951e-1138.8950S ribosomal protein L14 OS=Syntrophus aciditroph... [more]
RL14_SYMTH2.951e-1137.8450S ribosomal protein L14 OS=Symbiobacterium therm... [more]
RL14_PROMS2.951e-1140.2050S ribosomal protein L14 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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