CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PROM9 (50S ribosomal protein L14 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK L  I V G   R      A VGD+++ATVK   P++   + +V+ AVIVR +   RR  G  + F+DNA V++N     KG+ + GP+ +E  D
Sbjct:   11 ADNSGAKRLQCIRVLGSNRRY-----AHVGDVIVATVKDALPNMGVKKSEVVKAVIVRTKATLRRNTGNSIRFDDNAAVLINEDKNPKGTRVFGPVARELRD 107          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PROM2 (50S ribosomal protein L14 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK L  I V G   R      A VGD+++ATVK   P++   + +V+ AVIVR +   RR  G  + F+DNA V++N     KG+ + GP+ +E  D
Sbjct:   11 ADNSGAKRLQCIRVLGSNRRY-----AHVGDVIVATVKDALPNMGVKKSEVVKAVIVRTKATLRRNTGNSIRFDDNAAVLINEDKNPKGTRVFGPVARELRD 107          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PROM0 (50S ribosomal protein L14 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK L  I V G   R      A VGD+++ATVK   P++   + +V+ AVIVR +   RR  G  + F+DNA V++N     KG+ + GP+ +E  D
Sbjct:   11 ADNSGAKRLQCIRVLGSNRRY-----AHVGDVIVATVKDALPNMGVKKSEVVKAVIVRTKATLRRNTGNSIRFDDNAAVLINEDKNPKGTRVFGPVARELRD 107          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PORGI (50S ribosomal protein L14 OS=Porphyromonas gingivalis GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK    I V G  G   R  S  VGD+++ +VK   P  D++K  V  AVIVR +K  RR DG ++ F+DNA V++N  G+++GS I GP+ +E
Sbjct:   11 ADNSGAKEALCIRVLG--GTRRRYAS--VGDIIVVSVKSVIPSSDIKKGAVSKAVIVRTKKEVRRPDGSYIRFDDNACVLLNAAGDIRGSRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PORG3 (50S ribosomal protein L14 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK    I V G  G   R  S  VGD+++ +VK   P  D++K  V  AVIVR +K  RR DG ++ F+DNA V++N  G+++GS I GP+ +E
Sbjct:   11 ADNSGAKEALCIRVLG--GTRRRYAS--VGDIIVVSVKSVIPSSDIKKGAVSKAVIVRTKKEVRRPDGSYIRFDDNACVLLNAAGDIRGSRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_NOCFA (50S ribosomal protein L14 OS=Nocardia farcinica GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA V++    + +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVLIKADNDPRGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_NAUPA (50S ribosomal protein L14 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK +  I V G  G   R  S  VGD+++A+VKK  P+ + K   V+ AVIVR +K  +R++G  + F+DNA VI++ K E  G+ I GPI +E
Sbjct:   11 ADNSGAKEIMCIKVLG--GSKRRYAS--VGDIIVASVKKALPNGKIKKGQVVKAVIVRTKKEVQRENGSLIRFDDNAAVIIDAKKEPIGTRIFGPIARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_HYDS0 (50S ribosomal protein L14 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK + +I   GI   L +  S  VGD+V  TVK+  P+    + KV  AV+VR  K  +R DG ++ F+DNA +++N  GE  G+ I GPI +E
Sbjct:    8 LNVADNSGAKKVQMI---GIPYALRQYVS--VGDVVTVTVKEATPNGAAKKGKVYRAVVVRVAKELKRSDGSYIKFDDNAVILLNQYGESLGTRILGPIARE 104          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DESAA (50S ribosomal protein L14 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK L  I V G  G   R  S  VGD+++ +VK+  P+ + K   VM AVIVR +K  RR DG ++ F+DN+ V++N   E  G+ I GP+ +E
Sbjct:   11 ADNSGAKVLGCIKVLG--GSKRRYAS--VGDIIVVSVKEAIPNSKVKKGDVMKAVIVRTKKEIRRPDGTYIRFDDNSAVLINATKEPIGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_OEDCA (50S ribosomal protein L14, chloroplastic OS=Oedogonium cardiacum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 39/105 (37.14%), Postives = 65/105 (61.90%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  I V G   +     SA +G++++A VK   P+   K   ++ AVIVR +K  +R++G+ + F+DNA V++N +G  +G+ + GPI +E  D
Sbjct:    8 LNVADNSGARKLMCIRVLGGGNQ-----SANIGNIIIAVVKDAIPNTAFKKSDIVRAVIVRTKKGIKRENGMTIRFDDNAAVVINKEGNPRGTRVFGPIARELRD 107          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_PROM92.951e-1140.2050S ribosomal protein L14 OS=Prochlorococcus marin... [more]
RL14_PROM22.951e-1140.2050S ribosomal protein L14 OS=Prochlorococcus marin... [more]
RL14_PROM02.951e-1140.2050S ribosomal protein L14 OS=Prochlorococcus marin... [more]
RL14_PORGI2.951e-1144.4450S ribosomal protein L14 OS=Porphyromonas gingiva... [more]
RL14_PORG32.951e-1144.4450S ribosomal protein L14 OS=Porphyromonas gingiva... [more]
RL14_NOCFA2.951e-1140.2050S ribosomal protein L14 OS=Nocardia farcinica GN... [more]
RL14_NAUPA2.951e-1144.4450S ribosomal protein L14 OS=Nautilia profundicola... [more]
RL14_HYDS02.951e-1142.1650S ribosomal protein L14 OS=Hydrogenobaculum sp. ... [more]
RL14_DESAA2.951e-1143.4350S ribosomal protein L14 OS=Desulfatibacillum alk... [more]
RK14_OEDCA2.951e-1137.1450S ribosomal protein L14, chloroplastic OS=Oedogo... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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