CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DESVV (50S ribosomal protein L14 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + V +T+  ADN+GAK +  I V G   R      A VGD++M +VK+  P  + K   VM AVIVR  K  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DESVH (50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + V +T+  ADN+GAK +  I V G   R      A VGD++M +VK+  P  + K   VM AVIVR  K  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLGGSHRRY----ATVGDIIMVSVKEAMPHCKVKKGDVMQAVIVRTAKEVRRADGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLP8 (50S ribosomal protein L14 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK +  I V G  GR      A +GD +M TVK   P+    +K V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AALGDQIMVTVKAAVPNGVVKKKDVCKAVVVRCAKEQRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ARTS2 (50S ribosomal protein L14 OS=Arthrobacter sp. (strain FB24) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ARTCA (50S ribosomal protein L14 OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ARTAT (50S ribosomal protein L14 OS=Arthrobacter aurescens (strain TC1) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_EMIHU (50S ribosomal protein L14, chloroplastic OS=Emiliania huxleyi GN=rpl14 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GAK L  I V G   R        VGD+++  VK   P+L   R  V+ AVIVR ++  RRKDG  + F+DNA VI+N +   +G+ + GPI +E  D
Sbjct:    8 LNVADNSGAKKLMCIRVLGTNRRYGH-----VGDVIIGVVKDATPNLTVKRSDVVRAVIVRTKQSIRRKDGSRLRFDDNATVIINKENNPRGTRVFGPIARELKD 107          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CHLAT (50S ribosomal protein L14, chloroplastic OS=Chlorokybus atmophyticus GN=rpl14 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ +  I V G   R      A +GD+++A VK   P++   R +V+ AV+VR RK  RR +G+ + F+DNA V++N +G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKIMCIRVLGGSQR----QYATIGDVIIAVVKDSVPNMALKRSEVVRAVVVRTRKGLRRDNGMTIRFDDNAAVVINKEGNPRGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_KOCRD (50S ribosomal protein L14 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTKKQRRRPDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_BEUC1 (50S ribosomal protein L14 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA V++   GE +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTAKERRRPDGSYIRFDENAAVLLKSDGEPRGTRIFGPVGRELRD 108          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_DESVV4.117e-1341.6750S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RL14_DESVH4.117e-1341.6750S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RL14_CHLP84.117e-1343.1450S ribosomal protein L14 OS=Chlorobaculum parvum ... [more]
RL14_ARTS24.117e-1344.1250S ribosomal protein L14 OS=Arthrobacter sp. (str... [more]
RL14_ARTCA4.117e-1344.1250S ribosomal protein L14 OS=Arthrobacter chloroph... [more]
RL14_ARTAT4.117e-1344.1250S ribosomal protein L14 OS=Arthrobacter aurescen... [more]
RK14_EMIHU4.117e-1341.9050S ribosomal protein L14, chloroplastic OS=Emilia... [more]
RK14_CHLAT4.117e-1338.1050S ribosomal protein L14, chloroplastic OS=Chloro... [more]
RL14_KOCRD5.377e-1343.1450S ribosomal protein L14 OS=Kocuria rhizophila (s... [more]
RL14_BEUC15.377e-1343.1450S ribosomal protein L14 OS=Beutenbergia cavernae... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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