CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ADICA (50S ribosomal protein L14, chloroplastic OS=Adiantum capillus-veneris GN=rpl14 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 39/108 (36.11%), Postives = 69/108 (63.89%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + + + ++ ADN+GA+ L  I V G   R      A +GD+++A VK+  P++   R +V+ AV+VR R+  +R++G+ + F+DNA VI+N +G  +G+ I GP+ +E
Sbjct:    2 IQIQSYLDVADNSGARKLMCIRVLGTGNR----KYADIGDIIIAVVKEAVPNMFLKRSEVVRAVVVRTRRGLKRRNGMVLEFDDNAAVIINQEGNPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYNFM (50S ribosomal protein L14 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK LY I V G  G   R  S  VGD+++ +VK+  P+ + K   V+ AV+VR +K  RR DG ++ F+DN+ V++N   E  G+ I GP+ +E
Sbjct:    8 LNAADNSGAKRLYCIKVLG--GTRKRYAS--VGDIIVVSVKEAIPNAKVKKGDVLKAVVVRTQKEVRRPDGSYIKFDDNSAVLINQAKEPIGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SALTO (50S ribosomal protein L14 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGA+ +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SALAI (50S ribosomal protein L14 OS=Salinispora arenicola (strain CNS-205) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGA+ +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_HERA2 (50S ribosomal protein L14 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK L  I V G  G   R  S  VGD ++ATVK+  P    K   V+ AVIVR +K + R DG  + F+DNA VI+N +G  +G+ I GP+ +E
Sbjct:   11 ADNTGAKELLCIRVLG--GTKRRYAS--VGDTIIATVKQANPGGSAKKGEVVRAVIVRVKKGYTRPDGSMIQFDDNAAVIINQQGNPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLPB (50S ribosomal protein L14 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK +  I V G  GR      A +GD +M TVK   P     +K+V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQIMVTVKAAVPGGVVKKKEVTKAVVVRCAKEKRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_SCEOB (50S ribosomal protein L14, chloroplastic OS=Scenedesmus obliquus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  I V G  GR     +A +GD+++A VK   P++  K   V+ AVIVR  K  RR++G+ + F+DNA V++N +G  +G+ + GPI +E  D
Sbjct:    8 LNVADNSGARKLMCIRVLG-GGR----QTATIGDVIIAVVKDALPNMPLKKSDVVRAVIVRTSKGVRRENGMMLCFDDNAAVVINKEGNPRGTRVFGPIARELRD 107          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_PORPU (50S ribosomal protein L14, chloroplastic OS=Porphyra purpurea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ +  I V G        PS A +GD+++  VK   P++   R  V+ AV+VR RK  RR DG+ + F+DNA VI+N     +G+ + GPI +E  D
Sbjct:    8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRNDGMSIRFDDNAAVIINQDNNPRGTRVFGPIARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_UNCTG (50S ribosomal protein L14 OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=rplN PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GA+ +    V KG+K R      A +GD++ A+V+   P    K   V+ AV+VR  K  RR DG ++ F+DNA VI+N +GE KG+ I GP+ KE
Sbjct:    8 LNVADNSGARKIRCFRVTKGLKRRY-----ASIGDVIHASVQDALPHANVKKGDVVKAVVVRTVKEIRRADGTYIKFDDNATVIINDEGEPKGTRIFGPVAKE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_KINRD (50S ribosomal protein L14 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIRFDENAAVILRADGDPRGTRIFGPVGRE 105          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RK14_ADICA5.377e-1336.1150S ribosomal protein L14, chloroplastic OS=Adiant... [more]
RL14_SYNFM7.023e-1342.1650S ribosomal protein L14 OS=Syntrophobacter fumar... [more]
RL14_SALTO7.023e-1342.1650S ribosomal protein L14 OS=Salinispora tropica (... [more]
RL14_SALAI7.023e-1342.1650S ribosomal protein L14 OS=Salinispora arenicola... [more]
RL14_HERA27.023e-1346.4650S ribosomal protein L14 OS=Herpetosiphon auranti... [more]
RL14_CHLPB7.023e-1343.1450S ribosomal protein L14 OS=Chlorobium phaeobacte... [more]
RK14_SCEOB7.023e-1340.9550S ribosomal protein L14, chloroplastic OS=Scened... [more]
RK14_PORPU7.023e-1339.6250S ribosomal protein L14, chloroplastic OS=Porphy... [more]
RL14_UNCTG9.172e-1342.7250S ribosomal protein L14 OS=Uncultured termite gr... [more]
RL14_KINRD9.172e-1344.4450S ribosomal protein L14 OS=Kineococcus radiotole... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
back to top