CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_MARPO (50S ribosomal protein L14, chloroplastic OS=Marchantia polymorpha GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GA+ L  I V G   R      A +GD+++A VK+  P++   + +++ AVIVR  K ++R +G  + F+DNA V++N +G  KG+ + GPI +E
Sbjct:    8 LNVADNSGARKLMCIRVIGTSNR----KYANIGDIIIAVVKEAVPNMPIKKSEIVRAVIVRTCKEFKRNNGSIIKFDDNAAVVINQEGNPKGTRVFGPIARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_FAGEA (50S ribosomal protein L14, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 40/106 (37.74%), Postives = 66/106 (62.26%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR RK  +R++G+ + ++DNA VI++ KG  KG+ + G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAIPNMPLERSEVIRAVIVRTRKELKRENGMIIRYDDNAAVIIDQKGNPKGTRVFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_FRASN (50S ribosomal protein L14 OS=Frankia sp. (strain EAN1pec) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGA+ +  I V G  GR      A +GD+++ TVK   P     R  V+ AV+VR +K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----AGIGDIIVGTVKDALPGAGVKRGDVVKAVVVRTKKERRRPDGSYIRFDENAAVLIRDGGDPRGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_GRATL (50S ribosomal protein L14, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 40/111 (36.04%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  236 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 559
            + + + +N ADN+GA+ +  I V G     N    A +GD+++  VK   P++   +  ++ AVIVR +K  RR DG+ + F+DNA VI+N +   +G+ + GPI KE  D
Sbjct:    2 IQIQSYLNIADNSGARKIMCIQVLGS----NNPHYANIGDIIIGVVKDALPNMPIKKSDIIRAVIVRTKKTIRRNDGMSIRFDDNAAVIINQENNPRGTRVFGPIAKELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CYAP8 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 8801) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  + V G            +GD+++A VK   P++   R +++ AVIVR R+P RR  G+ + F+DNA VI+N  G  KG+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCLRVLGT----GNCRYGEIGDVIIAVVKDAIPNMPIKRSEIVRAVIVRTRQPVRRASGMSIRFDDNAAVIINNDGNPKGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_THEAB (50S ribosomal protein L14 OS=Thermosipho africanus (strain TCF52B) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK L +I V G     +R     VGD+V+ +V+   P  DL+K  V+ AVIVR +K  RR DG ++ F+DNA V+++   E KG+ + GP+ KE
Sbjct:    8 LNVADNSGAKLLRVIRVMGG----SRRKWGTVGDVVVCSVRDAVPNGDLKKGDVVKAVIVRTKKEIRRPDGTYIRFDDNAAVVLDKYNEPKGTRVFGPVAKE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_STRGG (50S ribosomal protein L14 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR  K  RR+DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTVKERRRQDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SOLUE (50S ribosomal protein L14 OS=Solibacter usitatus (strain Ellin6076) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ L  I  +G  G L     A +GD+V A VK+  PD    + KV+  VIVR RK  RRKDG ++ F+ NA V++N  GE  G+ + GP+ +E  D
Sbjct:   11 ADNSGARRLSCILPRG--GDLGL--RAGLGDVVTAAVKEAAPDSAIKKGKVVRCVIVRMRKETRRKDGTYIRFDSNAAVLINDVGEPVGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_NOCSJ (50S ribosomal protein L14 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+   GE +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTVKERRRPDGSYIRFDENAAVILKNDGEPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CARHZ (50S ribosomal protein L14 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + V   +N ADNTGAK L  I V G   R      A +GD+++ +VK+  PD    + +V+ AV+VR +K  RR DG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:    2 IQVQTILNSADNTGAKKLMCIRVLGGSNRRY----ASLGDIIVCSVKEATPDAVVKKGEVVKAVVVRTKKEVRRPDGTYIKFDENAAVIIKDDKSPRGTRIFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RK14_MARPO1.198e-1238.2450S ribosomal protein L14, chloroplastic OS=Marcha... [more]
RK14_FAGEA1.198e-1237.7450S ribosomal protein L14, chloroplastic OS=Fagopy... [more]
RL14_FRASN1.565e-1240.2050S ribosomal protein L14 OS=Frankia sp. (strain E... [more]
RK14_GRATL1.565e-1236.0450S ribosomal protein L14, chloroplastic OS=Gracil... [more]
RL14_CYAP82.043e-1238.1050S ribosomal protein L14 OS=Cyanothece sp. (strai... [more]
RL14_THEAB2.669e-1243.1450S ribosomal protein L14 OS=Thermosipho africanus... [more]
RL14_STRGG2.669e-1244.4450S ribosomal protein L14 OS=Streptomyces griseus ... [more]
RL14_SOLUE2.669e-1243.1450S ribosomal protein L14 OS=Solibacter usitatus (... [more]
RL14_NOCSJ2.669e-1244.4450S ribosomal protein L14 OS=Nocardioides sp. (str... [more]
RL14_CARHZ2.669e-1237.9650S ribosomal protein L14 OS=Carboxydothermus hydr... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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