CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_PORYE (50S ribosomal protein L14, chloroplastic OS=Porphyra yezoensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ +  I V G        PS A +GD+++  VK   P++   R  V+ AV+VR RK  RR DG+ + F DNA VI+N     +G+ + GPI +E  D
Sbjct:    8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRTDGMSIRFGDNAAVIINQDNNPRGTRVFGPIARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_TROWT (50S ribosomal protein L14 OS=Tropheryma whipplei (strain Twist) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL----RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK+L +I V G  G   R  S  +GD+V+A+VK   P      +  V+ AVIVR  K  RR DG ++ F+DNA VI+ P  + +G+ I GP+ +E  D
Sbjct:   11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRD 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_TROW8 (50S ribosomal protein L14 OS=Tropheryma whipplei (strain TW08/27) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL----RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK+L +I V G  G   R  S  +GD+V+A+VK   P      +  V+ AVIVR  K  RR DG ++ F+DNA VI+ P  + +G+ I GP+ +E  D
Sbjct:   11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRD 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_TRIEI (50S ribosomal protein L14 OS=Trichodesmium erythraeum (strain IMS101) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  I V G   R      A +GD+++A VK   P++  K   V+ AV+VR +K  RR  G+ + F+DNA VI+N  G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCIRVVGGGNRRY----AHIGDVIIAVVKDASPNMAVKKSDVVRAVVVRTKKGLRRDSGMSIRFDDNAAVIINQDGNPRGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYNP6 (50S ribosomal protein L14 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  I V G   R      A VGD+++A VK   P++  K   V+ AV+VR +K  RR  G  + F+DNA VI+N  G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCIRVLGSNRRY-----AGVGDVIIAVVKDALPNMPVKKSDVVRAVVVRTKKSLRRDSGNVIRFDDNAAVIINADGNPRGTRVFGPVARELRD 107          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYNE7 (50S ribosomal protein L14 OS=Synechococcus elongatus (strain PCC 7942) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  I V G   R      A VGD+++A VK   P++  K   V+ AV+VR +K  RR  G  + F+DNA VI+N  G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCIRVLGSNRRY-----AGVGDVIIAVVKDALPNMPVKKSDVVRAVVVRTKKSLRRDSGNVIRFDDNAAVIINADGNPRGTRVFGPVARELRD 107          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_RHOSR (50S ribosomal protein L14 OS=Rhodococcus sp. (strain RHA1) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P  +++K +V+ AVIVR  K  RR DG ++ F++NA V++ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDIIVATVKDAIPGGNIKKGEVVKAVIVRTTKERRRPDGSYIKFDENAAVLIKPDNDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_RHOOB (50S ribosomal protein L14 OS=Rhodococcus opacus (strain B4) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P  +++K +V+ AVIVR  K  RR DG ++ F++NA V++ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDIIVATVKDAIPGGNIKKGEVVKAVIVRTTKERRRPDGSYIKFDENAAVLIKPDNDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PROVI (50S ribosomal protein L14 OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK +  I V G  GR      A +GD V+ +VK   P     +K+V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQVIVSVKAAVPGGVVKKKEVCKAVVVRCAKELRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_FRASC (50S ribosomal protein L14 OS=Frankia sp. (strain CcI3) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGA+ +  I V G  GR      A +GD+++ TVK   P     R  V+ AV+VR  K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----AGIGDIIVGTVKDALPGAGVKRGDVVKAVVVRTTKERRRPDGSYIRFDENAAVLIRDGGDPRGTRIFGPVGRELRD 108          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RK14_PORYE2.669e-1239.6250S ribosomal protein L14, chloroplastic OS=Porphy... [more]
RL14_TROWT3.485e-1243.6950S ribosomal protein L14 OS=Tropheryma whipplei (... [more]
RL14_TROW83.485e-1243.6950S ribosomal protein L14 OS=Tropheryma whipplei (... [more]
RL14_TRIEI3.485e-1239.0550S ribosomal protein L14 OS=Trichodesmium erythra... [more]
RL14_SYNP63.485e-1240.0050S ribosomal protein L14 OS=Synechococcus sp. (st... [more]
RL14_SYNE73.485e-1240.0050S ribosomal protein L14 OS=Synechococcus elongat... [more]
RL14_RHOSR3.485e-1242.4250S ribosomal protein L14 OS=Rhodococcus sp. (stra... [more]
RL14_RHOOB3.485e-1242.4250S ribosomal protein L14 OS=Rhodococcus opacus (s... [more]
RL14_PROVI3.485e-1242.1650S ribosomal protein L14 OS=Prosthecochloris vibr... [more]
RL14_FRASC3.485e-1240.2050S ribosomal protein L14 OS=Frankia sp. (strain C... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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