CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_FRAAA (50S ribosomal protein L14 OS=Frankia alni (strain ACN14a) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGA+ +  I V G  GR      A +GD+++ TVK   P     R  V+ AV+VR  K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----AGIGDIIVGTVKDALPGAGVKRGDVVKAVVVRTTKERRRPDGSYIRFDENAAVLIRDGGDPRGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_BRAHW (50S ribosomal protein L14 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  236 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 559
            + V +T+N ADNTG K L  I V G     +R   A +GD+++ +V    P     + KV+ AVIVR +K  RR DG ++ F++NA VIV+ K E +G  I GP+ +E  D
Sbjct:    2 IQVPSTLNVADNTGVKKLKCIKVLGG----SRRRYATLGDVIICSVTDIIPTCSIEKGKVVKAVIVRVKKEVRRPDGSYIRFDENAAVIVDDKKEPRGKRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_LEMMI (50S ribosomal protein L14, chloroplastic OS=Lemna minor GN=rpl14 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 38/106 (35.85%), Postives = 67/106 (63.21%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR RK  +R++G+ + ++DNA V+++ +G  KG+ + G I +E  +L
Sbjct:    8 LNVADNSGARELMCIRILGASNRRY----ANIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTRKELKRENGMRIRYDDNAAVVIDQEGNPKGTRVFGAIARELREL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_THEM4 (50S ribosomal protein L14 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK L +I V G     +R     VGD+V+ +V+   P  DL+K  V+ AVIVR +K  RR DG ++ F+DNA V+++   E KG+ + GP+ KE
Sbjct:    8 LNVADNSGAKLLRVIRVMGG----SRRKWGTVGDIVVCSVRDAVPNGDLKKGDVVKAVIVRTKKEIRRPDGSYIRFDDNAAVVLDKYNEPKGTRVFGPVAKE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SULMW (50S ribosomal protein L14 OS=Sulcia muelleri (strain GWSS) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKK---GKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +  ADN+GAK + +I V G K        A +GD ++ ++K+   G    + ++  AV+VR +K  RRKDG ++ F+DNA V++   GEMKG+ I GP+ +E  D
Sbjct:    8 IRVADNSGAKEVLLIRVLGGK------KYAYIGDTIIVSIKEAIAGSSVKKGQLYKAVVVRTKKKIRRKDGSYIRFDDNACVLLTNTGEMKGTRILGPVSRELRD 106          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_STRCO (50S ribosomal protein L14 OS=Streptomyces coelicolor GN=rplN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR  K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTVKERRRPDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_STRAW (50S ribosomal protein L14 OS=Streptomyces avermitilis GN=rplN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR  K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTVKERRRPDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_RUBXD (50S ribosomal protein L14 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GA++L  I V G   R     SA +GD+++A+VK+  P    K   V+ AV+VR +K  RR+DG ++ F +NAGV++N  G  +G+ I GP+ +E
Sbjct:   11 ADNSGARSLLCIRVLGGSKRR----SAGIGDVIVASVKEATPGGAVKKGDVVRAVVVRTKKETRREDGSYIRFGENAGVLINSDGSPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCLE (50S ribosomal protein L14 OS=Mycobacterium leprae GN=rplN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ TVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----ASIGDVIVGTVKDAIPGGNVKRGDVVKAVVVRTAKECRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLCH (50S ribosomal protein L14 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK +  I V G  GR      A +GD V+ +VK   P     +K V  AV+VR  K  RRKDG ++ F++NA VI+N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQVIVSVKTAVPGGIVKKKDVCKAVVVRAVKESRRKDGSYIRFDENAVVILNAQGEPRGTRIFGPVARELRD 108          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_FRAAA3.485e-1240.2050S ribosomal protein L14 OS=Frankia alni (strain ... [more]
RL14_BRAHW3.485e-1240.5450S ribosomal protein L14 OS=Brachyspira hyodysent... [more]
RK14_LEMMI3.485e-1235.8550S ribosomal protein L14, chloroplastic OS=Lemna ... [more]
RL14_THEM44.552e-1243.1450S ribosomal protein L14 OS=Thermosipho melanesie... [more]
RL14_SULMW4.552e-1238.1050S ribosomal protein L14 OS=Sulcia muelleri (stra... [more]
RL14_STRCO4.552e-1244.4450S ribosomal protein L14 OS=Streptomyces coelicol... [more]
RL14_STRAW4.552e-1244.4450S ribosomal protein L14 OS=Streptomyces avermiti... [more]
RL14_RUBXD4.552e-1241.4150S ribosomal protein L14 OS=Rubrobacter xylanophi... [more]
RL14_MYCLE4.552e-1241.4150S ribosomal protein L14 OS=Mycobacterium leprae ... [more]
RL14_CHLCH4.552e-1243.1450S ribosomal protein L14 OS=Chlorobium chlorochro... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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