CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PELLD (50S ribosomal protein L14 OS=Pelodictyon luteolum (strain DSM 273) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = -3 
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK +  I V G  GR      A +GD V+ +VK   P     +K+V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQVIVSVKAAVPGGVVKKKEVCKAVVVRCVKEQRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108
[Close]
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCUA (50S ribosomal protein L14 OS=Mycobacterium ulcerans (strain Agy99) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -3 
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDIIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105
[Close]
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCTU (50S ribosomal protein L14 OS=Mycobacterium tuberculosis GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -3 
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105
[Close]
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCTA (50S ribosomal protein L14 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -3 
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105
[Close]
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCPA (50S ribosomal protein L14 OS=Mycobacterium paratuberculosis GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -3 
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105
[Close]
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCMM (50S ribosomal protein L14 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -3 
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDIIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105
[Close]
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCBT (50S ribosomal protein L14 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -3 
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105
[Close]
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCBP (50S ribosomal protein L14 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -3 
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105
[Close]
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCBO (50S ribosomal protein L14 OS=Mycobacterium bovis GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -3 
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105
[Close]
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCA1 (50S ribosomal protein L14 OS=Mycobacterium avium (strain 104) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -3 
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+ P  + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRE 105
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_PELLD5.945e-1242.1650S ribosomal protein L14 OS=Pelodictyon luteolum ... [more]
RL14_MYCUA5.945e-1242.4250S ribosomal protein L14 OS=Mycobacterium ulceran... [more]
RL14_MYCTU5.945e-1242.4250S ribosomal protein L14 OS=Mycobacterium tubercu... [more]
RL14_MYCTA5.945e-1242.4250S ribosomal protein L14 OS=Mycobacterium tubercu... [more]
RL14_MYCPA5.945e-1242.4250S ribosomal protein L14 OS=Mycobacterium paratub... [more]
RL14_MYCMM5.945e-1242.4250S ribosomal protein L14 OS=Mycobacterium marinum... [more]
RL14_MYCBT5.945e-1242.4250S ribosomal protein L14 OS=Mycobacterium bovis (... [more]
RL14_MYCBP5.945e-1242.4250S ribosomal protein L14 OS=Mycobacterium bovis (... [more]
RL14_MYCBO5.945e-1242.4250S ribosomal protein L14 OS=Mycobacterium bovis G... [more]
RL14_MYCA15.945e-1242.4250S ribosomal protein L14 OS=Mycobacterium avium (... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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