CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_AZOPC (50S ribosomal protein L14 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rplN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = -3
Query:  245 DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRKKVMP-AVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 529
            DN+GAK +  I V G  G   R  S  VGD+++ TVK   P  D++K ++  A+IVR +K  RR+DG ++ F+DNA V++N  GE++GS I GP+ +E
Sbjct:   12 DNSGAKEVLCIRVLG--GTRRRYAS--VGDIIVVTVKTVVPSSDIKKGIVSKAIIVRVKKEIRREDGSYIRFDDNACVLLNSTGEIRGSRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_GOSHI (50S ribosomal protein L14, chloroplastic OS=Gossypium hirsutum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I V G   R      A +GD+++A +K+  P+    R +V+ AVIVR RK  +R +G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct:    8 LNVADNSGARELMCIRVIGASNRRY----AHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_GOSBA (50S ribosomal protein L14, chloroplastic OS=Gossypium barbadense GN=rpl14 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I V G   R      A +GD+++A +K+  P+    R +V+ AVIVR RK  +R +G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct:    8 LNVADNSGARELMCIRVIGASNRRY----AHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CHLVU (50S ribosomal protein L14, chloroplastic OS=Chlorella vulgaris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGA+ L  I V G  G   R  +A VGD+++A VK   P++   R  ++ AVIVR RK  RR +G  + F++NA VI+N +   +G+ + GP+ +E  D
Sbjct:   11 ADNTGARELMCIRVLG--GGKQR--AATVGDIIIAVVKDATPNMPVKRSDIVRAVIVRTRKNVRRVNGTSIRFDENAAVIINKENNPRGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_BRADI (50S ribosomal protein L14, chloroplastic OS=Brachypodium distachyon GN=rpl14 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG  KG+ + G I +E  +L
Sbjct:    8 LNVADNSGARKLMCIRVIGTAGNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAITEELREL 110          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SULDN (50S ribosomal protein L14 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADNTGAK +  I V G  G   R   A VGD+++A+VKK  P  + K   V+ AVIVR  K   R++G  + F+DNA VI++ K E  G+ I GPI +E
Sbjct:    8 LNVADNTGAKEVMCIKVLG--GSKRRY--AQVGDVIIASVKKATPTAKVKKGKVVKAVIVRTAKEIHRENGSLIRFDDNAAVILDDKREPIGTRIFGPIARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PELPD (50S ribosomal protein L14 OS=Pelobacter propionicus (strain DSM 2379) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            ++ ADN+GAK L+ I V G   R      A VGD+++A+V++  P+ + K   V+ AVIVR  K   R DG ++ F+DN+GV++N + E  G+ I GP+ +E
Sbjct:    8 LDVADNSGAKKLFCIKVLGGSKR----KYAGVGDIIVASVREALPNSKVKKGDVVKAVIVRTAKELGRPDGSYIRFDDNSGVVINNQKEPVGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_NITSB (50S ribosomal protein L14 OS=Nitratiruptor sp. (strain SB155-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK +  I V G  G   R  S  VGD+++A+VKK  P+ + K   V+ AV+VR +K  +R++G  + F+DNA VI++ K E  G+ I GP+ +E
Sbjct:    8 LNVADNSGAKEIMAIKVLG--GSKRRYAS--VGDVIVASVKKALPNGKVKKGQVVKAVVVRTKKEIQRENGSLIRFDDNAAVILDNKNEPIGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCGI (50S ribosomal protein L14 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P     R  V+ AVIVR  K  RR DG ++ F++NA VI+    + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVIVRTVKERRRADGSYIRFDENAAVIIKNDNDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CYAP7 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 7424) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  + V G            +GD ++A VK   P++  K   V+ AVIVR R P RR  G+ + F+DNA VI+N  G  KG+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCLRVLGT----GNCRYGGIGDEIIAVVKDAIPNMPVKKSDVVKAVIVRTRHPLRRASGMTIRFDDNAAVIINNDGNPKGTRVFGPVARELRD 108          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_AZOPC7.765e-1243.8850S ribosomal protein L14 OS=Azobacteroides pseudo... [more]
RK14_GOSHI7.765e-1237.7450S ribosomal protein L14, chloroplastic OS=Gossyp... [more]
RK14_GOSBA7.765e-1237.7450S ribosomal protein L14, chloroplastic OS=Gossyp... [more]
RK14_CHLVU7.765e-1241.1850S ribosomal protein L14, chloroplastic OS=Chlore... [more]
RK14_BRADI7.765e-1237.7450S ribosomal protein L14, chloroplastic OS=Brachy... [more]
RL14_SULDN1.014e-1145.1050S ribosomal protein L14 OS=Sulfurimonas denitrif... [more]
RL14_PELPD1.014e-1140.2050S ribosomal protein L14 OS=Pelobacter propionicu... [more]
RL14_NITSB1.014e-1142.1650S ribosomal protein L14 OS=Nitratiruptor sp. (st... [more]
RL14_MYCGI1.014e-1143.4350S ribosomal protein L14 OS=Mycobacterium gilvum ... [more]
RL14_CYAP71.014e-1139.0550S ribosomal protein L14 OS=Cyanothece sp. (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
back to top