CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_STAMF (50S ribosomal protein L14P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.217e-34
Identity = 71/131 (54.20%), Postives = 96/131 (73.28%), Query Frame = -3
Query:  224 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 616
            M K+G+G  A ++ R++ GL V + V  ADN+GAK + II V G KGRL R+P A +GD+V+ TVKKG P++RK+V+ AVIVRQ++P+RR DG ++ FEDNA  IV P+G  KGS I GPI KE A+ WP+
Sbjct:    1 MPKKGKGKPAFSRRRIATGLQVGSYVRVADNSGAKLVKIIGVPGYKGRLRRIPPAGIGDLVVVTVKKGTPEMRKQVVKAVIVRQKRPFRRPDGTWVAFEDNAVAIVTPEGTPKGSEIRGPIAKEVAERWPQ 131          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_THEAC (50S ribosomal protein L14P OS=Thermoplasma acidophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.582e-33
Identity = 62/117 (52.99%), Postives = 88/117 (75.21%), Query Frame = -3
Query:  224 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 574
            R + GLP+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM MA+VKKG P++R KV+ AV++RQ++P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPR
Sbjct:    7 RQTRGLPLGANITCADNTGARSISLIDVKAWHGKARRIPAAGVGDMFMASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVQFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPR 123          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL23_ENCCU (60S ribosomal protein L23 OS=Encephalitozoon cuniculi GN=RPL23 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.678e-33
Identity = 63/119 (52.94%), Postives = 90/119 (75.63%), Query Frame = -3
Query:  224 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 580
            +++M+ G+ V   + CADN+GAK L  I VK  +GRLNRLP+A  GD+ + +VKKGKP+LRKKV  A+++RQ+K WRR DG  + FEDNA V++N KGE++G+ I GP+ +E AD+WP+
Sbjct:   19 RYKMTRGIQVETLMKCADNSGAKILRCIGVKRYRGRLNRLPAAAPGDICVVSVKKGKPELRKKVHYAILIRQKKIWRRTDGSHIMFEDNAAVLINNKGELRGAQIAGPVPREVADMWPK 137          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_THEVO (50S ribosomal protein L14P OS=Thermoplasma volcanium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.042e-32
Identity = 64/124 (51.61%), Postives = 91/124 (73.39%), Query Frame = -3
Query:  224 GSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 595
            G AG + R   GLP+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM +A+VKKG P++R KV+ AV++RQ++P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPR
Sbjct:    3 GIAGREIR---GLPLGANIVCADNTGARSISLIDVKAYHGKARRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPR 123          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_HYPBU (50S ribosomal protein L14P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.778e-32
Identity = 68/128 (53.12%), Postives = 92/128 (71.88%), Query Frame = -3
Query:  224 RGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 607
            +G  G AG +  ++ GL V + V  ADN+GAK   II V G KGRL R+P A VGDMV+ TVKKG P++RK+V+ A+++RQR+P+RR DG ++ FEDNA VIV+P G  KGS I GP+ +E A+ WP+
Sbjct:    3 KGAAG-AGPRRHIAAGLQVGSYVKVADNSGAKEAMIIGVIGYKGRLRRIPPAAVGDMVVVTVKKGTPEMRKQVVRAIVIRQRRPYRRPDGTWIAFEDNAVVIVSPDGTPKGSEIRGPVAREAAERWPK 129          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_AERPE (50S ribosomal protein L14P OS=Aeropyrum pernix GN=rpl14p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.032e-32
Identity = 68/131 (51.91%), Postives = 96/131 (73.28%), Query Frame = -3
Query:  224 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 616
            M+K+ + G   +++ ++ GL V + V  ADN+GAK + IISV  +K RL RLPSA VGD+V+ +VKKG P +R++V+ AV+VRQR+P+RR DG ++ FEDNA VIVNP G  +GS + GPI +E A+ WPR
Sbjct:    1 MAKKKKYGVVVSRYGVNTGLQVGSYVPVADNSGAKEVMIISVPQVKTRLRRLPSAGVGDLVVVSVKKGTPQMRRQVVYAVVVRQRRPFRRPDGTWVSFEDNAVVIVNPDGTPRGSEVRGPIAREAAERWPR 131          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_METKA (50S ribosomal protein L14P OS=Methanopyrus kandleri GN=rpl14p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.960e-32
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = -3
Query:  224 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 559
            LPV A + CADNTGA+ L II+VKG KG   RLP+A +GDMV+ +VK+G PD+RK+V+ AVIVRQRK +RR DG  + FEDNA VIV P G  +GS I GP+ KE A+ WPR
Sbjct:   13 LPVGARLVCADNTGARELQIIAVKGYKGVRRRLPNAGIGDMVVCSVKEGTPDMRKEVVNAVIVRQRKEYRRPDGTRVKFEDNAAVIVTPDGAPRGSEIRGPVAKEAAERWPR 124          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PICTO (50S ribosomal protein L14P OS=Picrophilus torridus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.379e-31
Identity = 62/117 (52.99%), Postives = 85/117 (72.65%), Query Frame = -3
Query:  224 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 574
            R + GLP+ A + C DNTGAK + +I VK +     R+P+A VGDM +A+VKKG P++R KV+ AV+VRQR+P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPR
Sbjct:    7 RETRGLPLGALIPCVDNTGAKMISLIDVKALHTVAKRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVVRQRRPYRRADGTMIEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPR 123          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_METTH (50S ribosomal protein L14P OS=Methanobacterium thermoautotrophicum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31
Identity = 65/116 (56.03%), Postives = 87/116 (75.00%), Query Frame = -3
Query:  227 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWP 574
            +++  LPV A + C DNTGA+ + IISV+G KG   RL +A VGDMV+ +VKKG  D+R++V+ AVIVRQ+K +RR DG+ + FEDNA VIV+P+G +KGS I GP+ KE AD WP
Sbjct:    7 KVTRALPVGARLQCVDNTGAREVEIISVRGYKGVRRRLAAAGVGDMVVVSVKKGTVDMRREVLNAVIVRQKKEYRRPDGLRVKFEDNAAVIVSPEGVLKGSEIRGPVAKEAADRWP 122          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_METST (50S ribosomal protein L14P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.274e-30
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = -3
Query:  227 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWP 571
            +S  LP+ A + C DNTGA+ + IISVKG KG   RL SA VGDMV+ +VKKG  D+R++V  AV+VRQ+K +RR DG+ + FEDNA VI+   G +KGS I GPI KE ADLWP
Sbjct:    8 VSKSLPIGARLKCIDNTGAREVEIISVKGFKGVRRRLASAGVGDMVVISVKKGTADMRREVTTAVVVRQKKEYRRADGLRVKFEDNAAVIITEDGVLKGSEIRGPIAKEAADLWP 122          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_STAMF7.217e-3454.2050S ribosomal protein L14P OS=Staphylothermus mari... [more]
RL14_THEAC3.582e-3352.9950S ribosomal protein L14P OS=Thermoplasma acidoph... [more]
RL23_ENCCU4.678e-3352.9460S ribosomal protein L23 OS=Encephalitozoon cunic... [more]
RL14_THEVO1.042e-3251.6150S ribosomal protein L14P OS=Thermoplasma volcani... [more]
RL14_HYPBU1.778e-3253.1350S ribosomal protein L14P OS=Hyperthermus butylic... [more]
RL14_AERPE3.032e-3251.9150S ribosomal protein L14P OS=Aeropyrum pernix GN=... [more]
RL14_METKA3.960e-3260.7150S ribosomal protein L14P OS=Methanopyrus kandler... [more]
RL14_PICTO4.379e-3152.9950S ribosomal protein L14P OS=Picrophilus torridus... [more]
RL14_METTH7.469e-3156.0350S ribosomal protein L14P OS=Methanobacterium the... [more]
RL14_METST1.274e-3057.3950S ribosomal protein L14P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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