CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CORDI (50S ribosomal protein L14 OS=Corynebacterium diphtheriae GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGA+ +  I V G  G   R   A +GD+++ATVK+  P    K   V+ AVIVR +K  RR DG ++ F++NA V++    E +G+ I GP+ +E  D
Sbjct:   11 ADNTGAREILCIRVLG--GSTRRF--AGIGDVIVATVKEATPGGNVKAGEVVKAVIVRAKKETRRPDGSYIKFDENAAVLIKNDNEPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLL2 (50S ribosomal protein L14 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK +  I V G  GR      A +GD V+ +VK   P     +K V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AGLGDQVIVSVKAAVPGGVVKKKDVCKAVVVRCAKEQRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_BACTN (50S ribosomal protein L14 OS=Bacteroides thetaiotaomicron GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + V + +   DN+GAK    I V G  GR      A VGD+++ +VK   P  D++K  V  A+IVR +K  RR DG ++ F+DNA V++N  GE++GS I GP+ +E
Sbjct:    2 IQVESRLTVCDNSGAKEALCIRVLGGTGRRY----ASVGDVIVVSVKSVIPSSDVKKGAVSKALIVRTKKEIRRPDGSYIRFDDNACVLLNNAGEIRGSRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_BACFR (50S ribosomal protein L14 OS=Bacteroides fragilis GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + V + +   DN+GAK    I V G  GR      A VGD+++ +VK   P  D++K  V  A+IVR +K  RR DG ++ F+DNA V++N  GE++GS I GP+ +E
Sbjct:    2 IQVESRLTVCDNSGAKEALCIRVLGGTGRRY----ASVGDVIVVSVKSVIPSSDVKKGAVSKALIVRTKKEIRRPDGSYIRFDDNACVLLNNAGEIRGSRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_BACFN (50S ribosomal protein L14 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + V + +   DN+GAK    I V G  GR      A VGD+++ +VK   P  D++K  V  A+IVR +K  RR DG ++ F+DNA V++N  GE++GS I GP+ +E
Sbjct:    2 IQVESRLTVCDNSGAKEALCIRVLGGTGRRY----ASVGDVIVVSVKSVIPSSDVKKGAVSKALIVRTKKEIRRPDGSYIRFDDNACVLLNNAGEIRGSRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ANATD (50S ribosomal protein L14 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I V G   R      A +GD+++ +VK   P     +  V+ AVIVR RK  RR+DG ++ F+DNA V++   G  +G+ I GP+ +E  D
Sbjct:   11 ADNTGAKEVMCIRVLGGSNR----KFANIGDVIVCSVKDATPGGVVKKGDVVKAVIVRTRKGVRREDGTYIRFDDNAAVLIREDGTPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_WHEAT (50S ribosomal protein L14, chloroplastic OS=Triticum aestivum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR  K ++ +DG+ + ++DNA VI++ KG  KG+ + G I +E   L
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIVAVIKDALPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRGL 110          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CYAPA (50S ribosomal protein L14, cyanelle OS=Cyanophora paradoxa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +  ADN+GA+ L  I V G   R      A +GD+++A VK G P++   +   + AVIVR RK  +R +G+ + F+DNA VI+N  G  +G+ + GP+ +E  D
Sbjct:    8 LTAADNSGARKLMCIRVLGGGNRRY----ARIGDVIVAVVKDGIPNIPIKKSDTVKAVIVRTRKELKRDNGMNICFDDNAAVIINADGNPRGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CUSRE (50S ribosomal protein L14, plastid OS=Cuscuta reflexa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 38/102 (37.25%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR RK  +R +G+ + ++DNA V+++ +G  KG+ I G I +E
Sbjct:    8 LNVADNSGARELMCIQIIGASNRRY----AHIGDIIVAVIKEAVPNMPLERSEVVRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_TREPS (50S ribosomal protein L14 OS=Treponema pallidum subsp. pallidum (strain SS14) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = -3
Query:  233 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 559
            + V + +N ADN+GA+ +  I V G     +R   A VGD+++  VK   P     +  V  AVIVR  K +RR DG ++ F+DNA V+++  G  KG  I GP+ +E  D+
Sbjct:    2 IQVQSRLNVADNSGARLVQCIKVVGG----SRRRYASVGDIIVVAVKDALPTSVIKKGSVEKAVIVRVSKEYRRVDGTYIRFDDNACVVIDANGNPKGKRIFGPVARELRDM 109          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_CORDI1.014e-1141.1850S ribosomal protein L14 OS=Corynebacterium dipht... [more]
RL14_CHLL21.014e-1142.1650S ribosomal protein L14 OS=Chlorobium limicola (... [more]
RL14_BACTN1.014e-1140.7450S ribosomal protein L14 OS=Bacteroides thetaiota... [more]
RL14_BACFR1.014e-1140.7450S ribosomal protein L14 OS=Bacteroides fragilis ... [more]
RL14_BACFN1.014e-1140.7450S ribosomal protein L14 OS=Bacteroides fragilis ... [more]
RL14_ANATD1.014e-1140.2050S ribosomal protein L14 OS=Anaerocellum thermoph... [more]
RK14_WHEAT1.014e-1137.7450S ribosomal protein L14, chloroplastic OS=Tritic... [more]
RK14_CYAPA1.014e-1138.1050S ribosomal protein L14, cyanelle OS=Cyanophora ... [more]
RK14_CUSRE1.014e-1137.2550S ribosomal protein L14, plastid OS=Cuscuta refl... [more]
RL14_TREPS1.324e-1137.5050S ribosomal protein L14 OS=Treponema pallidum su... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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