CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCPE (50S ribosomal protein L14 OS=Mycoplasma penetrans GN=rplN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD--LRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADNTGAK + +I V G  G   R  S  VGD+V+ +VKK +PD  +RK +V  AVIVR +K   R  G  + F+DNA VI+      +GS I GP+ +E  D
Sbjct:    8 LNVADNTGAKQVGVIKVLG--GTKRRYAS--VGDIVVVSVKKAQPDGIVRKGQVCKAVIVRVKKNITRSSGNSLSFDDNACVIIKEDKTPRGSRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCA9 (50S ribosomal protein L14 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+    + +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDIIVATVKDAIPGGTVKRGDVVKAVVVRTVKERRRPDGSYIKFDENAAVIIKADNDPRGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_LYSSC (50S ribosomal protein L14 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ +  I V G  GR     +A +GD+V+ TVKK  P     +  V+ AVIVR +   RRKDG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:   11 ADNSGAREVLTIKVLGGSGR----KTANIGDIVVCTVKKATPGGVVKKGDVVKAVIVRTKSGVRRKDGTYIKFDENACVIIRDDKSPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_HALOH (50S ribosomal protein L14 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGA+ L  I V G     +R   A VGD+++ATVK+  PD    + +V+ AV+VR +K  RR DG ++ F++NA V+++     +G+ I GP+ +E
Sbjct:   11 ADNTGARELLCIRVLGG----SRKRYAGVGDIIVATVKEAIPDGMVKKGEVVKAVVVRTKKETRRPDGSYIKFDENAAVLIDKANNPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_EUBR3 (50S ribosomal protein L14 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK L +I V G  G   R   A +GD+++ATVK   P     +  V+ AV+VR  K  RRKDG ++ F++NA VI+      KG+ I GP+ +E
Sbjct:   11 ADNTGAKELLVIRVMG--GSTRRY--ANIGDVIVATVKDATPGGVVKKGDVVKAVVVRSVKGARRKDGSYIKFDENAAVIIKDDKTPKGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_EUBE2 (50S ribosomal protein L14 OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I V G  G   R   A +GD+++ATVK+  P     +  V+ AV+VR  K  RRKDG ++ F++NA VI+      KG+ I GP+ +E  D
Sbjct:   11 ADNTGAKEILCIRVMG--GSTRRY--ANIGDVIVATVKEATPGGVVKKGDVVKAVVVRSVKGARRKDGSYIKFDENAAVIIKDDQTPKGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ELUMP (50S ribosomal protein L14 OS=Elusimicrobium minutum (strain Pei191) GN=rplN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  236 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 559
            + + + +N ADN+GA+ +    V+G   R      A +GD++M +V+   P    K   V+ AV+VR  +  RRKDG ++ F++NA  I+N  GE KG+ + GPI +E  D
Sbjct:    2 IQLRSIINVADNSGARKVQCFKVRGGHHR----DIATLGDVIMCSVRDAIPTSSIKKGDVVRAVVVRVAREKRRKDGSYIRFDENAVCIINENGEPKGTRVFGPIARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_NICTO (50S ribosomal protein L14, chloroplastic OS=Nicotiana tomentosiformis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E  +L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNMPLERSEVVRAVIVRTCKELKRDNGIIIRYDDNAAVVIDQEGNPKGTRIFGAIARELREL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_NANDO (50S ribosomal protein L14, chloroplastic OS=Nandina domestica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 37/106 (34.91%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P +   R +V+ AVIVR RK  +R +G+ + ++DNA V+++ +G  +G+ + G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPHMPLQRSEVIRAVIVRTRKELKRDNGMIIQYDDNAAVVIDQEGNPRGTRVFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_GUITH (50S ribosomal protein L14, chloroplastic OS=Guillardia theta GN=rpl14 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK +  I + G   +      A +GD+++  VK   P++   R  V+ AVI+R +   RRKDG+ + F+DNA VI+N +   +G+ + GPI +E  D
Sbjct:   11 ADNSGAKKIMCIRILGGNRKY-----ASIGDVIIGVVKDATPNMPVKRSDVVRAVIMRTKNTIRRKDGMSIRFDDNAAVIINKENNPRGTRVFGPIARELRD 107          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_MYCPE1.730e-1144.7650S ribosomal protein L14 OS=Mycoplasma penetrans ... [more]
RL14_MYCA91.730e-1141.1850S ribosomal protein L14 OS=Mycobacterium abscess... [more]
RL14_LYSSC1.730e-1140.2050S ribosomal protein L14 OS=Lysinibacillus sphaer... [more]
RL14_HALOH1.730e-1140.4050S ribosomal protein L14 OS=Halothermothrix oreni... [more]
RL14_EUBR31.730e-1143.4350S ribosomal protein L14 OS=Eubacterium rectale (... [more]
RL14_EUBE21.730e-1142.1650S ribosomal protein L14 OS=Eubacterium eligens (... [more]
RL14_ELUMP1.730e-1136.0450S ribosomal protein L14 OS=Elusimicrobium minutu... [more]
RK14_NICTO1.730e-1135.8550S ribosomal protein L14, chloroplastic OS=Nicoti... [more]
RK14_NANDO1.730e-1134.9150S ribosomal protein L14, chloroplastic OS=Nandin... [more]
RK14_GUITH1.730e-1137.2550S ribosomal protein L14, chloroplastic OS=Guilla... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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