CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CUCSA (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +KK  P+    R +V+ AVIVR  K  +R++G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKKAVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ANGEV (50S ribosomal protein L14, chloroplastic OS=Angiopteris evecta GN=rpl14 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GA+ L  I V G   R      A  GD+++A VK+  P++   + +V+ AV+VR  K  +R +G+ + F+DNA V++N +G  +G+ + GPI +E
Sbjct:    8 LNVADNSGARKLMCIRVLGTSDR----EYADTGDVIVAVVKEAVPNMPLKKSEVVRAVVVRTCKELKRDNGMRIRFDDNAAVVINQEGNPRGTRVFGPIARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_THELT (50S ribosomal protein L14 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK L +I V G   +        VGD+V+ +V+   P+    + +V+ AVIVR +KP RR DG ++ F+DNA V+++   E +G+ + GP+ +E
Sbjct:    8 LNVADNSGAKKLRVIRVMGGFHK----KYGTVGDIVVCSVRDVVPNTGIKKGEVVKAVIVRTKKPVRRPDGTYIRFDDNAAVLIDKFNEPRGTRVFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PELPB (50S ribosomal protein L14 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK +  I V G  GR      A +GD ++ +VK   P     +K V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQIIVSVKAAVPGGIVKKKDVCRAVVVRCVKESRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_OCEIH (50S ribosomal protein L14 OS=Oceanobacillus iheyensis GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ +  I V G  GR     +A +GD+++ TVK+  P     + +V+ AVIVR +   RRKDG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:   11 ADNSGAREVLTIKVLGGSGR----KTANIGDVIVCTVKQATPGGVVKKGEVVKAVIVRSKSGARRKDGSYIRFDENAAVIIRDDKSPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_NOSP7 (50S ribosomal protein L14 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  I V G   R        +GD ++A VK   P++  K   V+ AVIVR RK   R  G+ + F+DNA VI+N  G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCIRVLGGGNRRYGF----IGDKIIAVVKDATPNMAVKKSDVVEAVIVRTRKAVSRDSGMSIRFDDNAAVIINKDGNPRGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCSS (50S ribosomal protein L14 OS=Mycobacterium sp. (strain MCS) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK+  P    K   V+ AV+VR  K  RR DG ++ F++NA VI+    + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKEAIPGANVKRGDVVKAVVVRTVKERRRADGSYIKFDENAAVIIKNDNDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCSK (50S ribosomal protein L14 OS=Mycobacterium sp. (strain KMS) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK+  P    K   V+ AV+VR  K  RR DG ++ F++NA VI+    + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKEAIPGANVKRGDVVKAVVVRTVKERRRADGSYIKFDENAAVIIKNDNDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCSJ (50S ribosomal protein L14 OS=Mycobacterium sp. (strain JLS) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK+  P    K   V+ AV+VR  K  RR DG ++ F++NA VI+    + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKEAIPGANVKRGDVVKAVVVRTVKERRRADGSYIKFDENAAVIIKNDNDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_EXISA (50S ribosomal protein L14 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GA+ L  I V G  GR     +A +GD+++ATVK+  P     +  V+ AV+VR ++  RRKDG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:   11 ADNSGARELLTIKVLGGSGR----KTANIGDIIVATVKQATPGGVVKKGDVVRAVVVRTKRGARRKDGSYIRFDENAAVIIKDDKSPRGTRIFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RK14_CUCSA1.730e-1136.7950S ribosomal protein L14, chloroplastic OS=Cucumi... [more]
RK14_ANGEV1.730e-1137.2550S ribosomal protein L14, chloroplastic OS=Angiop... [more]
RL14_THELT2.259e-1138.2450S ribosomal protein L14 OS=Thermotoga lettingae ... [more]
RL14_PELPB2.259e-1141.1850S ribosomal protein L14 OS=Pelodictyon phaeoclat... [more]
RL14_OCEIH2.259e-1138.2450S ribosomal protein L14 OS=Oceanobacillus iheyen... [more]
RL14_NOSP72.259e-1139.0550S ribosomal protein L14 OS=Nostoc punctiforme (s... [more]
RL14_MYCSS2.259e-1141.4150S ribosomal protein L14 OS=Mycobacterium sp. (st... [more]
RL14_MYCSK2.259e-1141.4150S ribosomal protein L14 OS=Mycobacterium sp. (st... [more]
RL14_MYCSJ2.259e-1141.4150S ribosomal protein L14 OS=Mycobacterium sp. (st... [more]
RL14_EXISA2.259e-1139.3950S ribosomal protein L14 OS=Exiguobacterium sp. (... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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