CB304892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ORYSJ (50S ribosomal protein L14, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl14 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = -3 Query: 233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541 +N ADN+GA+ L I V G A +GD+++A +K P + R +V+ AVIVR K ++ +DG+ + ++DNA VI++ KG KG+ + G I +E +L Sbjct: 8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELREL 110
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ORYSI (50S ribosomal protein L14, chloroplastic OS=Oryza sativa subsp. indica GN=rpl14 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = -3 Query: 233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541 +N ADN+GA+ L I V G A +GD+++A +K P + R +V+ AVIVR K ++ +DG+ + ++DNA VI++ KG KG+ + G I +E +L Sbjct: 8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELREL 110
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ORYSA (50S ribosomal protein L14, chloroplastic OS=Oryza sativa GN=rpl14 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = -3 Query: 233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541 +N ADN+GA+ L I V G A +GD+++A +K P + R +V+ AVIVR K ++ +DG+ + ++DNA VI++ KG KG+ + G I +E +L Sbjct: 8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELREL 110
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ORYNI (50S ribosomal protein L14, chloroplastic OS=Oryza nivara GN=rpl14 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = -3 Query: 233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541 +N ADN+GA+ L I V G A +GD+++A +K P + R +V+ AVIVR K ++ +DG+ + ++DNA VI++ KG KG+ + G I +E +L Sbjct: 8 LNVADNSGARKLMCIRVIGAASNQRY---ARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELREL 110
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_NICSY (50S ribosomal protein L14, chloroplastic OS=Nicotiana sylvestris GN=rpl14 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = -3 Query: 233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541 +N ADN+GA+ L I + G R A +GD+++A +K+ P++ R +V+ AVIVR K +R +G+ + ++DNA V+++ +G KG+ I G I +E +L Sbjct: 8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELREL 109
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CUSEX (50S ribosomal protein L14, plastid OS=Cuscuta exaltata GN=rpl14 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 38/106 (35.85%), Postives = 65/106 (61.32%), Query Frame = -3 Query: 233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541 +N ADN+GA+ L I + G R A +GD+++A +K+ P++ R +++ AVIVR RK +R +G+ + ++DNA V+++ +G KG+ I G I +E L Sbjct: 8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAVPNMPLERSELVRAVIVRTRKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRPL 109
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYNJA (50S ribosomal protein L14 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplN PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = -3 Query: 245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532 ADNTGA+ L I V G GR A +GD+++ VK P++ K V+ AV++R RR DG+ + F+DNA VI+N G +G+ + GP+ +E Sbjct: 11 ADNTGARKLMCIRVLGSSGRRY----ASLGDVIVGVVKDALPNMPVKKSDVVKAVVIRTVDTVRRPDGMCIRFDDNAAVIINDDGNPRGTRVFGPVARE 105
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYNAS (50S ribosomal protein L14 OS=Syntrophus aciditrophicus (strain SB) GN=rplN PE=3 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = -3 Query: 245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559 + + +N ADN+GAK + I V G G R A VGD+++ VK+ P+ + K VM AVIVR K RR+DG ++ F+DN+ V+++ + E G+ I GP+ +E Sbjct: 2 IQMQTVLNVADNSGAKKVACIKVLG--GSKRRY--AGVGDVIVVAVKEAMPNSKVKKGDVMKAVIVRTAKEVRRQDGSYLKFDDNSAVLISNQMEPIGTRIFGPVARE 105
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYMTH (50S ribosomal protein L14 OS=Symbiobacterium thermophilum GN=rplN PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = -3 Query: 236 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 559 + V + ADNTGAK L I V G G R A +GD+++ +VK+ P + V+ AV+VR +K RR+DG ++ F++NA VI+ E +G+ I GP+ +E D Sbjct: 2 IQVQTRLQVADNTGAKELMCIKVLG--GSWRRY--ANIGDVIVCSVKEASPGGVVKKGDVVRAVVVRTKKGLRREDGSYIRFDENAAVILKDDKEPRGTRIFGPVARELRD 108
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PROMS (50S ribosomal protein L14 OS=Prochlorococcus marinus (strain AS9601) GN=rplN PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = -3 Query: 236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532 ADN+GAK L I V G R A VGD+++ATVK P++ + +V+ AVIVR + RR G + F+DNA V++N KG+ + GP+ +E D Sbjct: 11 ADNSGAKRLQCIRVLGSNRRY-----AHVGDVIVATVKDALPNMGVKKSEVVKAVIVRTKATLRRNTGNSIRFDDNAAVLINEDKNPKGTRVFGPVARELRD 107 The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 356
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bpback to top |