CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DESHY (50S ribosomal protein L14 OS=Desulfitobacterium hafniense (strain Y51) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = -3
Query:  236 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 559
            + V   +   DN+GAK L  I V G  G + R  S  +GD+++A+VK+  P     +  V+ AV+VR +K  +RKDG ++ F +NA V++      +G+ I GP+ +E  D
Sbjct:    2 IQVQTRLRVGDNSGAKELMCIKVLG--GSMRRYAS--IGDIIVASVKEATPGGVVKKGDVVKAVVVRTKKEIKRKDGTYIRFSENAAVVIKDDRSPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DESHD (50S ribosomal protein L14 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = -3
Query:  236 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 559
            + V   +   DN+GAK L  I V G  G + R  S  +GD+++A+VK+  P     +  V+ AV+VR +K  +RKDG ++ F +NA V++      +G+ I GP+ +E  D
Sbjct:    2 IQVQTRLRVGDNSGAKELMCIKVLG--GSMRRYAS--IGDIIVASVKEATPGGVVKKGDVVKAVVVRTKKEIKRKDGTYIRFSENAAVVIKDDRSPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CLOTE (50S ribosomal protein L14 OS=Clostridium tetani GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  236 TVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 544
            T+  ADN+GA+ +  I V G   R      A +GD+++A+VK   P     + +V+ AV+VR +K  RR DG ++ F++NA VI+    + KG+ I GP+ +E  D
Sbjct:    7 TLKVADNSGARGIMCIKVLGGSNRRY----ANIGDIIVASVKSATPGGVVKKGEVVKAVVVRSKKGVRRADGSYIKFDENAAVIIKDDKQPKGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CAMLR (50S ribosomal protein L14 OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK L  I V G  G   R   A VGD+++A+VKK  P+ + K   V+ AVIVR +K   R +G  + F++NA VI++ K E  G+ I GP+G+E
Sbjct:   11 ADNSGAKELMCIKVLG--GSKRRY--ATVGDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDAKREPIGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_BIFAA (50S ribosomal protein L14 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            ++ ADNTGAK L  I V G  G   R   A +GD+++A+VK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+    E KG+ I GP+G+E  D
Sbjct:    8 LHVADNTGAKELLAIRVLG--GSKRRY--AGIGDVIVASVKDAIPGGSVKKGDVVKAVVVRTVKEHRRVDGSYIKFDENAAVILGSGREPKGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_BIFA0 (50S ribosomal protein L14 OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=rplN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            ++ ADNTGAK L  I V G  G   R   A +GD+++A+VK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+    E KG+ I GP+G+E  D
Sbjct:    8 LHVADNTGAKELLAIRVLG--GSKRRY--AGIGDVIVASVKDAIPGGSVKKGDVVKAVVVRTVKERRRADGSYIKFDENAAVILGSGREPKGTRIFGPVGRELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_PIPCE (50S ribosomal protein L14, chloroplastic OS=Piper cenocladum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 37/106 (34.91%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E   L
Sbjct:    8 LNVADNSGARELMCIRILGASNRRY----ANIGDIIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_LEPTE (50S ribosomal protein L14, chloroplastic OS=Leptosira terrestris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GA+ L  I + G  GR  +     +GD+++A VK   P++   + +++ AVIVR RK   R +G  + F++NA VI+N +G  +G+ I GP+ +E
Sbjct:    8 LNVADNSGARKLMCIRILG--GRQKQYGK--IGDVIIAVVKDALPNMPLKKSEIVRAVIVRTRKGVNRNNGTSIRFDENAAVIINKEGNPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_DAUCA (50S ribosomal protein L14, chloroplastic OS=Daucus carota GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLARSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_COFAR (50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQL 109          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_DESHY3.854e-1135.1450S ribosomal protein L14 OS=Desulfitobacterium ha... [more]
RL14_DESHD3.854e-1135.1450S ribosomal protein L14 OS=Desulfitobacterium ha... [more]
RL14_CLOTE3.854e-1136.7950S ribosomal protein L14 OS=Clostridium tetani GN... [more]
RL14_CAMLR3.854e-1144.4450S ribosomal protein L14 OS=Campylobacter lari (s... [more]
RL14_BIFAA3.854e-1142.8650S ribosomal protein L14 OS=Bifidobacterium adole... [more]
RL14_BIFA03.854e-1142.8650S ribosomal protein L14 OS=Bifidobacterium anima... [more]
RK14_PIPCE3.854e-1134.9150S ribosomal protein L14, chloroplastic OS=Piper ... [more]
RK14_LEPTE3.854e-1137.2550S ribosomal protein L14, chloroplastic OS=Leptos... [more]
RK14_DAUCA3.854e-1135.8550S ribosomal protein L14, chloroplastic OS=Daucus... [more]
RK14_COFAR3.854e-1135.8550S ribosomal protein L14, chloroplastic OS=Coffea... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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