CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_THEPX (50S ribosomal protein L14 OS=Thermoanaerobacter sp. (strain X514) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I ++G   R      + VGD+++A+VK   P     + +V+ AVIVR +K   RKDG ++ F+DNA VI+    + +G+ I GP+ +E
Sbjct:   11 ADNTGAKEIMCIRLEGGSNR----KFSNVGDVIVASVKSATPGGVVKKGEVVKAVIVRTKKGIARKDGTYIRFDDNAAVIIRDDKQPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_THEP3 (50S ribosomal protein L14 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I ++G   R      + VGD+++A+VK   P     + +V+ AVIVR +K   RKDG ++ F+DNA VI+    + +G+ I GP+ +E
Sbjct:   11 ADNTGAKEIMCIRLEGGSNR----KFSNVGDVIVASVKSATPGGVVKKGEVVKAVIVRTKKGIARKDGTYIRFDDNAAVIIRDDKQPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PROMP (50S ribosomal protein L14 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK L  I V G   R      A VGD+V+A+VK   P++  K   V+ AVIVR R   RR  G  + F+DNA V++N     KG+ + GP+ +E  D
Sbjct:   11 ADNSGAKRLQCIRVLGSNRRY-----AHVGDVVVASVKDALPNMGVKKSDVVKAVIVRTRHTLRRNTGNSIRFDDNAAVLINEDKNPKGTRVFGPVARELRD 107          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_PROM5 (50S ribosomal protein L14 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GAK L  I V G   R      A VGD+V+A+VK   P++  K   V+ AVIVR R   RR  G  + F+DNA V++N     KG+ + GP+ +E  D
Sbjct:   11 ADNSGAKRLQCIRVLGSNRRY-----AHVGDVVVASVKDALPNMGVKKSDVVKAVIVRTRHTLRRNTGNSIRFDDNAAVLINEDKNPKGTRVFGPVARELRD 107          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_HELPY (50S ribosomal protein L14 OS=Helicobacter pylori GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK +  I V G  G   R  S  VG +++A+VKK  P+    R +V+ AV+VR +K  +RK+G  + F+DNA VI++ K +  G+ I GP+ +E
Sbjct:    8 LNVADNSGAKEIMCIKVLG--GSHKRYAS--VGSVIVASVKKAIPNGKVKRGQVVKAVVVRTKKEIQRKNGSLVRFDDNAAVILDAKKDPVGTRIFGPVSRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_HELPS (50S ribosomal protein L14 OS=Helicobacter pylori (strain Shi470) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK +  I V G  G   R  S  VG +++A+VKK  P+    R +V+ AV+VR +K  +RK+G  + F+DNA VI++ K +  G+ I GP+ +E
Sbjct:    8 LNVADNSGAKEIMCIKVLG--GSHKRYAS--VGSVIVASVKKAIPNGKVKRGQVVKAVVVRTKKEIQRKNGSLVRFDDNAAVILDAKKDPVGTRIFGPVSRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_HELPH (50S ribosomal protein L14 OS=Helicobacter pylori (strain HPAG1) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK +  I V G  G   R  S  VG +++A+VKK  P+    R +V+ AV+VR +K  +RK+G  + F+DNA VI++ K +  G+ I GP+ +E
Sbjct:    8 LNVADNSGAKEIMCIKVLG--GSHKRYAS--VGSVIVASVKKAIPNGKVKRGQVVKAVVVRTKKEIQRKNGSLVRFDDNAAVILDAKKDPVGTRIFGPVSRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_HELPG (50S ribosomal protein L14 OS=Helicobacter pylori (strain G27) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK +  I V G  G   R  S  VG +++A+VKK  P+    R +V+ AV+VR +K  +RK+G  + F+DNA VI++ K +  G+ I GP+ +E
Sbjct:    8 LNVADNSGAKEIMCIKVLG--GSHKRYAS--VGSVIVASVKKAIPNGKVKRGQVVKAVVVRTKKEIQRKNGSLVRFDDNAAVILDAKKDPVGTRIFGPVSRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_HELP2 (50S ribosomal protein L14 OS=Helicobacter pylori (strain P12) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK +  I V G  G   R  S  VG +++A+VKK  P+    R +V+ AV+VR +K  +RK+G  + F+DNA VI++ K +  G+ I GP+ +E
Sbjct:    8 LNVADNSGAKEIMCIKVLG--GSHKRYAS--VGSVIVASVKKAIPNGKVKRGQVVKAVVVRTKKEIQRKNGSLVRFDDNAAVILDAKKDPVGTRIFGPVSRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_HELAH (50S ribosomal protein L14 OS=Helicobacter acinonychis (strain Sheeba) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK +  I V G  G   R  S  VG +++A+VKK  P+    R +V+ AV+VR +K  +RK+G  + F+DNA VI++ K +  G+ I GP+ +E
Sbjct:    8 LNVADNSGAKEIMCIKVLG--GSHKRYAS--VGSVIVASVKKAIPNGKVKRGQVVKAVVVRTKKEIQRKNGSLVRFDDNAAVILDAKKDPVGTRIFGPVSRE 105          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_THEPX5.033e-1139.3950S ribosomal protein L14 OS=Thermoanaerobacter sp... [more]
RL14_THEP35.033e-1139.3950S ribosomal protein L14 OS=Thermoanaerobacter ps... [more]
RL14_PROMP5.033e-1142.1650S ribosomal protein L14 OS=Prochlorococcus marin... [more]
RL14_PROM55.033e-1142.1650S ribosomal protein L14 OS=Prochlorococcus marin... [more]
RL14_HELPY5.033e-1141.1850S ribosomal protein L14 OS=Helicobacter pylori G... [more]
RL14_HELPS5.033e-1141.1850S ribosomal protein L14 OS=Helicobacter pylori (... [more]
RL14_HELPH5.033e-1141.1850S ribosomal protein L14 OS=Helicobacter pylori (... [more]
RL14_HELPG5.033e-1141.1850S ribosomal protein L14 OS=Helicobacter pylori (... [more]
RL14_HELP25.033e-1141.1850S ribosomal protein L14 OS=Helicobacter pylori (... [more]
RL14_HELAH5.033e-1141.1850S ribosomal protein L14 OS=Helicobacter acinonyc... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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