CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_GEOSW (50S ribosomal protein L14 OS=Geobacillus sp. (strain WCH70) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ + +I V G  GR      A +GD+V+ATVK+  P     + +V+ AV+VR ++  RR DG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:   11 ADNSGAREVLVIKVLGGSGRRY----ANIGDVVVATVKEATPGGVVKKGQVVKAVVVRTKRGVRRSDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_GEOSL (50S ribosomal protein L14 OS=Geobacter sulfurreducens GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 40/108 (37.04%), Postives = 64/108 (59.26%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + +   ++ ADN+GAK L+ I V G   R      A VGD+V+ +V++  P+ + K   V+  VIVR  K   R DG ++ F+DN+GV++N + E  G+ I GP+ +E
Sbjct:    2 IQMQTVLDVADNSGAKKLFCIKVLGGSKR----KYAGVGDIVVCSVREAVPNAKVKKGDVVKVVIVRTAKEIGRPDGSYIRFDDNSGVVINNQREPVGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CAMJR (50S ribosomal protein L14 OS=Campylobacter jejuni (strain RM1221) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK L  I V G  G   R   A VGD+++A+VKK  P+ + K   V+ AVIVR +K   R +G  + F++NA VI++ K E  G+ I GP+G+E
Sbjct:   11 ADNSGAKELMCIKVLG--GSKRRY--ATVGDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CAMJJ (50S ribosomal protein L14 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK L  I V G  G   R   A VGD+++A+VKK  P+ + K   V+ AVIVR +K   R +G  + F++NA VI++ K E  G+ I GP+G+E
Sbjct:   11 ADNSGAKELMCIKVLG--GSKRRY--ATVGDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CAMJE (50S ribosomal protein L14 OS=Campylobacter jejuni GN=rplN PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK L  I V G  G   R   A VGD+++A+VKK  P+ + K   V+ AVIVR +K   R +G  + F++NA VI++ K E  G+ I GP+G+E
Sbjct:   11 ADNSGAKELMCIKVLG--GSKRRY--ATVGDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CAMJD (50S ribosomal protein L14 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK L  I V G  G   R   A VGD+++A+VKK  P+ + K   V+ AVIVR +K   R +G  + F++NA VI++ K E  G+ I GP+G+E
Sbjct:   11 ADNSGAKELMCIKVLG--GSKRRY--ATVGDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CAMJ8 (50S ribosomal protein L14 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK L  I V G  G   R   A VGD+++A+VKK  P+ + K   V+ AVIVR +K   R +G  + F++NA VI++ K E  G+ I GP+G+E
Sbjct:   11 ADNSGAKELMCIKVLG--GSKRRY--ATVGDVIVASVKKALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ANAVT (50S ribosomal protein L14 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  I V G            +GD ++A VK   P++  K   V+ AVIVR R   RR  G+ + F+DNA VI+N  G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCIRVLGA----GNSRYGFIGDKIIAVVKDATPNMAVKKSDVVEAVIVRTRHHIRRDSGMTIRFDDNAAVIINKDGNPRGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_ANASP (50S ribosomal protein L14 OS=Anabaena sp. (strain PCC 7120) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GA+ L  I V G            +GD ++A VK   P++  K   V+ AVIVR R   RR  G+ + F+DNA VI+N  G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKLMCIRVLGA----GNSRYGFIGDKIIAVVKDATPNMAVKKSDVVEAVIVRTRHHIRRDSGMTIRFDDNAAVIINKDGNPRGTRVFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_PSEAK (50S ribosomal protein L14, chloroplastic OS=Pseudendoclonium akinetum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 38/105 (36.19%), Postives = 63/105 (60.00%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKV---MPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            +N ADN+GAK L  I V G   +     SA +GD+++A VK+  P++  K    + AV+VR  +  +R++G F+ F+DNA V++N     +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGAKKLMCIRVLGGSYK----QSANIGDIIIAVVKQATPNMPLKKSDKVRAVVVRTAQGVQRENGTFIRFDDNAAVVINKDDNPRGTRVFGPVARELRD 108          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_GEOSW5.033e-1138.2450S ribosomal protein L14 OS=Geobacillus sp. (stra... [more]
RL14_GEOSL5.033e-1137.0450S ribosomal protein L14 OS=Geobacter sulfurreduc... [more]
RL14_CAMJR5.033e-1144.4450S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJJ5.033e-1144.4450S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJE5.033e-1144.4450S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJD5.033e-1144.4450S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_CAMJ85.033e-1144.4450S ribosomal protein L14 OS=Campylobacter jejuni ... [more]
RL14_ANAVT5.033e-1138.1050S ribosomal protein L14 OS=Anabaena variabilis (... [more]
RL14_ANASP5.033e-1138.1050S ribosomal protein L14 OS=Anabaena sp. (strain ... [more]
RK14_PSEAK5.033e-1136.1950S ribosomal protein L14, chloroplastic OS=Pseude... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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