CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_PLAOC (50S ribosomal protein L14, chloroplastic OS=Platanus occidentalis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 37/106 (34.91%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_PAUCH (50S ribosomal protein L14, organellar chromatophore OS=Paulinella chromatophora GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK +  I V G   R      A VGD+++A VK   P++  K   V+ AVIVR +   RR+ G  + F+DNA VI+N     KG+ + GP+ +E
Sbjct:    8 LNVADNSGAKRIQCIRVLGSNRRY-----AHVGDIIVAAVKDAMPNMSVKKSDVVKAVIVRTKATLRRETGNSIRFDDNAAVIINDDKNPKGTRVFGPVARE 104          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_PANGI (50S ribosomal protein L14, chloroplastic OS=Panax ginseng GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 37/106 (34.91%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLARSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_DRIGR (50S ribosomal protein L14, chloroplastic OS=Drimys granadensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 37/106 (34.91%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNMPLQRSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_CHAVU (50S ribosomal protein L14, chloroplastic OS=Chara vulgaris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 35/102 (34.31%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GA+ L  I +       +    A +GD ++A VK+  P++   + +++ AV+VR RK  +R+ G+ + F+DNA VI+N  G  +G+ + GP+ +E
Sbjct:    8 LNVADNSGARKLMCIRILNS----SNCKYANIGDTIIAVVKEAIPNMSIKKSEIVKAVVVRTRKGIKRQSGITIRFDDNAAVIINQDGNPRGTRVFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SYNJB (50S ribosomal protein L14 OS=Synechococcus sp. GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGA+ +  I V G  GR      A +GD+++  VK   P++  K   V+ AV++R     RR DG+ + F+DNA VI+N  G  +G+ + GP+ +E
Sbjct:   11 ADNTGARKMMCIRVLGSSGRRY----ASLGDVIIGVVKDALPNMPVKKSDVVKAVVIRTVDTVRRPDGMCIRFDDNAAVIINNDGNPRGTRVFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_MYCS2 (50S ribosomal protein L14 OS=Mycobacterium smegmatis GN=rplN PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADNTGAK +  I V G   R      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA VI+    + +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSSRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTVKERRRADGSYIKFDENAAVIIKNDNDPRGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_LACH4 (50S ribosomal protein L14 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GA+ L +I V G   R     +  +GD+V+ TVK+  P     +  V+ AVIVR +   RR+DG ++ F++NAGVI+N     +G+ I GP+ +E
Sbjct:   11 ADNSGARELLVIRVLGGSKR----KTGNIGDIVVCTVKQATPGGVVKKGDVVKAVIVRTKSGARREDGSYIKFDENAGVIINADKSPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_LACAC (50S ribosomal protein L14 OS=Lactobacillus acidophilus GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GA+ L +I V G   R     +  +GD+V+ TVK+  P     +  V+ AVIVR +   RR+DG ++ F++NAGVI+N     +G+ I GP+ +E
Sbjct:   11 ADNSGARELLVIRVLGGSKR----KTGNIGDIVVCTVKQATPGGVVKKGDVVKAVIVRTKSGARREDGSYIKFDENAGVIINADKSPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_GEMAT (50S ribosomal protein L14 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 43/104 (41.35%), Postives = 59/104 (56.73%), Query Frame = -3
Query:  245 ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 547
            + V  ADN+GAK   +I V G  G   R   A +GD V+  VK   P+    +  V  AV+VR  K  RRKDG ++ F++NA VI+N  GE K + I GP+ +E
Sbjct:    6 SVVKVADNSGAKRALVIRVLG--GTRRRY--AGLGDRVIVAVKDALPNGTVKKSDVAKAVVVRTVKETRRKDGSYIRFDENAVVIINDNGEPKATRIFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RK14_PLAOC5.033e-1134.9150S ribosomal protein L14, chloroplastic OS=Platan... [more]
RK14_PAUCH5.033e-1140.2050S ribosomal protein L14, organellar chromatophor... [more]
RK14_PANGI5.033e-1134.9150S ribosomal protein L14, chloroplastic OS=Panax ... [more]
RK14_DRIGR5.033e-1134.9150S ribosomal protein L14, chloroplastic OS=Drimys... [more]
RK14_CHAVU5.033e-1134.3150S ribosomal protein L14, chloroplastic OS=Chara ... [more]
RL14_SYNJB6.573e-1138.3850S ribosomal protein L14 OS=Synechococcus sp. GN=... [more]
RL14_MYCS26.573e-1141.4150S ribosomal protein L14 OS=Mycobacterium smegmat... [more]
RL14_LACH46.573e-1139.3950S ribosomal protein L14 OS=Lactobacillus helveti... [more]
RL14_LACAC6.573e-1139.3950S ribosomal protein L14 OS=Lactobacillus acidoph... [more]
RL14_GEMAT6.573e-1141.3550S ribosomal protein L14 OS=Gemmatimonas aurantia... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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