CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DICTD (50S ribosomal protein L14 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 38/102 (37.25%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +    + G K        A VGD+++A+VK+  P    K   V+ AV++R ++  +RKDG  + F+DNA VI++ +G  +G+ + GP+ +E  D
Sbjct:   11 ADNTGAKEIMCFRILGKK------KVAQVGDIIVASVKEAVPRSNIKKGDVVYAVVIRTKRTIKRKDGSCVRFDDNAAVIIDKEGNPRGTRVFGPVARELRD 106          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CYTH3 (50S ribosomal protein L14 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = -3
Query:  236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541
            ++ ADN+GAK + +I V G  G+      A +GD V+ TVK        K   V  AV+VR +K  +R DG ++ F DNA V++N   E +G+ I GP+ +E  D
Sbjct:    8 LSVADNSGAKEVLVIRVLGGTGKRY----ASIGDKVVVTVKSAISSSNMKKGTVSKAVVVRTKKEVKRADGSYIRFSDNAAVLLNNNDEPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLTR (50S ribosomal protein L14 OS=Chlamydia trachomatis GN=rplN PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R    RKDG  + F+ N+ VI++ KG  KG+ I GPI +E  D
Sbjct:   11 ADNTGAKKVKCFKVLGG----SRRRYATVGDVIVCSVRDVEPDSSVKKGDVVKAVIVRTRNDIHRKDGSTLRFDTNSCVIIDDKGNPKGTRIFGPIAREIRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLTA (50S ribosomal protein L14 OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 43/102 (42.16%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R    RKDG  + F+ N+ VI++ KG  KG+ I GPI +E  D
Sbjct:   11 ADNTGAKKVKCFKVLGG----SRRRYATVGDVIVCSVRDVEPDSSVKKGDVVKAVIVRTRNDIHRKDGSTLRFDTNSCVIIDDKGNPKGTRIFGPIAREIRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CAMHC (50S ribosomal protein L14 OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GAK L  I + G  G   R   A VGD+++ +VKK  P+    R +V+ AV+VR +K   R +G  + F++NA V+++ K E+ G+ I GP+G+E
Sbjct:   11 ADNSGAKELMCIKILG--GSKRRY--ATVGDIIVCSVKKALPNGKIKRGQVVKAVVVRTKKELHRGNGSLIRFDENAAVVLDSKKELIGTRIFGPVGRE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_BACV8 (50S ribosomal protein L14 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = -3
Query:  245 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 559
            + V + +   DN+GAK    I V G  G   R  S  VGD+++ ++K   P  D++K  V  A+IVR +K  RR DG ++ F+DNA V++N  GE++GS I GP+ +E
Sbjct:    2 IQVESRLTVCDNSGAKEALCIRVLG--GTKRRYAS--VGDVIVVSIKSVIPSSDVKKGAVSKALIVRTKKEIRRADGSYIRFDDNACVLLNNAGEIRGSRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_POPTR (50S ribosomal protein L14, chloroplastic OS=Populus trichocarpa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGTSNRRY----AHIGDIIIAVIKEAVPNSPLERSEVIRAVIVRTSKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_POPAL (50S ribosomal protein L14, chloroplastic OS=Populus alba GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  233 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADL 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct:    8 LNVADNSGARELMCIRIIGTSNRRY----AHIGDVIIAVIKEAVPNSPLERSEVIRAVIVRTSKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQL 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_ODOSI (50S ribosomal protein L14, chloroplastic OS=Odontella sinensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGA+ +  I V G   +      A +GD ++  VK+  P++   R  ++ A++VR  K  RR DG+++ F+DNA VIVN     +G+ + GP+ +E  D
Sbjct:   11 ADNTGARKIMCIRVLGGNRKY-----AKIGDTIIGVVKEAIPNMPIKRSDIVRAIVVRTSKTIRRPDGMYIRFDDNAAVIVNLDNNPRGTRVFGPVAREIRD 107          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RK14_IPOPU (50S ribosomal protein L14, chloroplastic OS=Ipomoea purpurea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 37/102 (36.27%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDKEGNPKGTRIFGAIARE 105          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_DICTD6.573e-1137.2550S ribosomal protein L14 OS=Dictyoglomus turgidum... [more]
RL14_CYTH36.573e-1138.1050S ribosomal protein L14 OS=Cytophaga hutchinsoni... [more]
RL14_CHLTR6.573e-1142.1650S ribosomal protein L14 OS=Chlamydia trachomatis... [more]
RL14_CHLTA6.573e-1142.1650S ribosomal protein L14 OS=Chlamydia trachomatis... [more]
RL14_CAMHC6.573e-1140.4050S ribosomal protein L14 OS=Campylobacter hominis... [more]
RL14_BACV86.573e-1139.8150S ribosomal protein L14 OS=Bacteroides vulgatus ... [more]
RK14_POPTR6.573e-1135.8550S ribosomal protein L14, chloroplastic OS=Populu... [more]
RK14_POPAL6.573e-1135.8550S ribosomal protein L14, chloroplastic OS=Populu... [more]
RK14_ODOSI6.573e-1136.2750S ribosomal protein L14, chloroplastic OS=Odonte... [more]
RK14_IPOPU6.573e-1136.2750S ribosomal protein L14, chloroplastic OS=Ipomoe... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
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