CB304892

Overview
NameCB304892
Unique NameCB304892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:123..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_GEOTN (50S ribosomal protein L14 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ + +I V G  GR      A +GD+V+ATVK   P     + +V+ AV+VR ++  RR DG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:   11 ADNSGAREVLVIKVLGGSGRRY----ANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRSDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_GEOSF (50S ribosomal protein L14 OS=Geobacter sp. (strain FRC-32) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            ++ ADN+GAK L+ I V G   R      A +GD+++A+VK+  P+ + K   V+ AV+VR  K   R DG ++ F+ N+GV++N + E  G+ I GP+ +E
Sbjct:    8 LDVADNSGAKKLFCIKVLGGSKR----KYAGIGDIIVASVKEAIPNSKVKKGDVVKAVVVRTAKEIGRPDGSYIRFDGNSGVVINNQKEPVGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_EXIS2 (50S ribosomal protein L14 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532
            ADN+GA+ +  I V G  GR     +A +GD+++ TVK+  P     + +V+ AV+VR ++  RRKDG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:   11 ADNSGAREVLTIKVLGGSGR----KTANIGDVIVCTVKQATPGGVVKKGEVVRAVVVRTKRGVRRKDGSYIRFDENAAVIIKDDKSPRGTRIFGPVARE 105          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CORJK (50S ribosomal protein L14 OS=Corynebacterium jeikeium (strain K411) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK-GEMKGSAIPGPIGKECAD 532
            ADNTGA+ + +I   G  G + R  SA +GD+V+ATVK+  P    K   ++ AVIVR +K  RR DG ++ F++NA VI+     + +G+ I GP+ +E  D
Sbjct:   11 ADNTGAREILVIRPLG--GSVRR--SAGIGDVVVATVKEAAPGGTVKAGDIVKAVIVRAKKETRRPDGSYIAFDENAAVIIKANDNDPRGTRIFGPVARELRD 109          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLFF (50S ribosomal protein L14 OS=Chlamydophila felis (strain Fe/C-56) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R+   RKDG  + F+ N+ VI++ KG  KG+ I GPI +E  D
Sbjct:   11 ADNTGAKKVKCFKVLGG----SRRRYATVGDIIVCSVRDVEPDSSIKKGDVVKAVIVRTRRDILRKDGSSLRFDTNSCVIIDEKGNPKGTRIFGPIAREIRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLCV (50S ribosomal protein L14 OS=Chlamydophila caviae GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R+   RKDG  + F+ N+ VI++ KG  KG+ I GPI +E  D
Sbjct:   11 ADNTGAKKVKCFKVLGG----SRRRYATVGDIIVCSVRDVEPDSSIKKGDVVKAVIVRTRRDILRKDGSSLRFDTNSCVIIDEKGNPKGTRIFGPIAREIRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CHLAB (50S ribosomal protein L14 OS=Chlamydophila abortus GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +    V G     +R   A VGD+++ +V+  +PD   K   V+ AVIVR R+   RKDG  + F+ N+ VI++ KG  KG+ I GPI +E  D
Sbjct:   11 ADNTGAKRVKCFKVLGG----SRRRYATVGDVIVCSVRDVEPDSSVKKGDVVKAVIVRTRRNILRKDGSSLKFDTNSCVIIDEKGNPKGTRIFGPIAREIRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_CALS8 (50S ribosomal protein L14 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADNTGAK +  I V G   R      A +GD+++ +VK   P     +  V+ AVIVR RK  RR+DG ++ F+DNA V++      +G+ I GP+ +E  D
Sbjct:   11 ADNTGAKEVMCIRVLGGSNR----KFANIGDIIVCSVKDATPGGVVKKGDVVKAVIVRTRKGIRREDGTYIRFDDNAAVLIREDKTPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_BACWK (50S ribosomal protein L14 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532
            ADN+GA+ L  I V G  GR      A +GD+++ATVK+  P     +  V+ AV+VR +   RR DG ++ F++NA VI+      +G+ I GP+ +E  D
Sbjct:   11 ADNSGARELLTIKVLGGSGR----KYAYIGDIIVATVKQATPGGVVKKGDVVKAVVVRTKSGARRPDGSYIKFDENAAVIIKDDKSPRGTRIFGPVARELRD 108          
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_AQUAE (50S ribosomal protein L14 OS=Aquifex aeolicus GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  245 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 541
            +N ADN+GAK + +I +     +      A +GD+V  TVK+  P     + K+  A+IVR  K  RR DG ++ F+DNA V++N  GE  G+ + GPI +E
Sbjct:    8 LNVADNSGAKKVQVIGIPYAPRKY-----ATLGDVVTVTVKEALPQGNAKKGKIYRAIIVRTAKEVRRPDGSYIKFDDNACVLLNQYGEPLGTRVLGPIARE 104          
The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 356
Match NameE-valueIdentityDescription
RL14_GEOTN8.585e-1138.2450S ribosomal protein L14 OS=Geobacillus thermoden... [more]
RL14_GEOSF8.585e-1138.2450S ribosomal protein L14 OS=Geobacter sp. (strain... [more]
RL14_EXIS28.585e-1137.3750S ribosomal protein L14 OS=Exiguobacterium sibir... [more]
RL14_CORJK8.585e-1140.7850S ribosomal protein L14 OS=Corynebacterium jeike... [more]
RL14_CHLFF8.585e-1142.1650S ribosomal protein L14 OS=Chlamydophila felis (... [more]
RL14_CHLCV8.585e-1142.1650S ribosomal protein L14 OS=Chlamydophila caviae ... [more]
RL14_CHLAB8.585e-1142.1650S ribosomal protein L14 OS=Chlamydophila abortus... [more]
RL14_CALS88.585e-1139.2250S ribosomal protein L14 OS=Caldicellulosiruptor ... [more]
RL14_BACWK8.585e-1138.2450S ribosomal protein L14 OS=Bacillus weihenstepha... [more]
RL14_AQUAE8.585e-1138.2450S ribosomal protein L14 OS=Aquifex aeolicus GN=r... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATCAACAAAACTCCAAA
CTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAAAGTTCA
CAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTTCTTTTT
AGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGGCTTAAACG
ATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACACTCTTT
ACCAATTGGACCGGGGATGGCAGAACCCTTCATTTCTCCCTTTGGATTCA
CAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCCTTTCTG
CGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTTCTTCCT
AAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTCCAACAC
AGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACTGAGATG
ATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGTTGCTGC
CACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATCCTCCAC
GTCCTCGCTTCGACATTT
back to top