CB304892
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_METB6 (50S ribosomal protein L14P OS=Methanoregula boonei (strain 6A8) GN=rpl14p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23 Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = -3 Query: 224 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 559 L + CADNTGA+ + I+SV G G R P +GD+ TVKKG PD+RKK++ AV++RQ+K RR +G+ + F+DNA V+V+ K E KG+ I GP+ +E A+ +P+ Sbjct: 12 LATGTKLTCADNTGARIVQIVSVFGYHGVRRRQPKMGLGDIATVTVKKGTPDMRKKLVRAVVIRQKKEMRRPNGLRVSFDDNAVVVVDEKNEPKGTEIKGPVAREVAERYPK 123
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22 Identity = 48/112 (42.86%), Postives = 78/112 (69.64%), Query Frame = -3 Query: 224 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 559 L + + CADNTGA+ + I+SV G G NR P +GD+ TVKKG PD+++K++ AV+VRQ+K +RR +G+ + FE+NA +++N G+ +G+ I GP+ +E A+ +P+ Sbjct: 12 LQTGSKMVCADNTGARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILLNENGDPRGTDIKGPVAREVAERFPK 123
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_UNCMA (50S ribosomal protein L14P OS=Uncultured methanogenic archaeon RC-I GN=rpl14p PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.108e-21 Identity = 47/119 (39.50%), Postives = 79/119 (66.39%), Query Frame = -3 Query: 224 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 580 K ++ + A + ADNTGA+ + +ISV +GR NR+P A +GD+ + +VKKG P++RK ++ V++RQ+K +RR G+ + FEDNA V+V+ + KG+ I GP+ +E A+ + + Sbjct: 5 KAKIPRSVHTATRLEVADNTGARLVEVISVLKYRGRKNRMPKAGIGDIFIGSVKKGTPEMRKTIVRCVVIRQKKEYRRPSGLRVSFEDNACVLVDDNNDPKGTEIKGPVAREVAERYAK 123
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_METHJ (50S ribosomal protein L14P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl14p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20 Identity = 47/106 (44.34%), Postives = 71/106 (66.98%), Query Frame = -3 Query: 224 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 541 + CADNTGA+ + ++SV G G R P + D+ +VKKG PD+R+K++ AV++RQ+K RR G+ + FEDNA V+V+ K E +G+ I GP+ +E A +PR Sbjct: 18 LTCADNTGARVVQVVSVFGYHGVRRRQPKLGLADIATVSVKKGTPDMRRKLVRAVVIRQKKEIRRPSGLRLSFEDNAVVVVDDKNEPRGTEIKGPVAREVAIRYPR 123
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_METMJ (50S ribosomal protein L14P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl14p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 5.932e-20 Identity = 46/112 (41.07%), Postives = 74/112 (66.07%), Query Frame = -3 Query: 224 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECADLWPR 559 L + + C+DNTGA+ + ++SV G R P +GD+ +VKKG PD+R+K+ AV++RQ+K RR +G+ + FEDNA V++N +GE KG+ I G + +E A+ +P+ Sbjct: 12 LATGSRMVCSDNTGARLVEVVSVDRYHGVRRRQPCLGLGDVATVSVKKGTPDMRRKLEKAVVIRQKKEIRRPNGIRLSFEDNAMVLINERGEPKGTEIKGAVPREIAERFPK 123
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DEHE1 (50S ribosomal protein L14 OS=Dehalococcoides ethenogenes (strain 195) GN=rplN PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.047e-16 Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = -3 Query: 236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541 +N ADNTGAK + I+V G +L A VGD+++A VKK PD + K V+ AV+VR KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E D Sbjct: 8 LNVADNTGAKKIMCINVLGGSRKLQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DEHSC (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain CBDB1) GN=rplN PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16 Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = -3 Query: 236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541 +N ADNTGAK + I+V G ++ A VGD+++A VKK PD + K V+ AV+VR KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E D Sbjct: 8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_DEHSB (50S ribosomal protein L14 OS=Dehalococcoides sp. (strain BAV1) GN=rplN PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16 Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = -3 Query: 236 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 541 +N ADNTGAK + I+V G ++ A VGD+++A VKK PD + K V+ AV+VR KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E D Sbjct: 8 LNVADNTGAKKIMCINVLGGSHKIQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_THERP (50S ribosomal protein L14 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplN PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.579e-15 Identity = 46/99 (46.46%), Postives = 68/99 (68.69%), Query Frame = -3 Query: 245 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKE 532 ADNTGAK + I V G G +R + VGD+++A+VKK +P+ K V+ AVIVR +K +RRKDG ++ F+DNA V+V P+G+ +G+ I GP+ +E Sbjct: 11 ADNTGAKEIMCIRVLG--GSKHRYGT--VGDLIVASVKKAEPNAAVKKGDVVYAVIVRTKKEYRRKDGSYIKFDDNAAVLVTPQGQPRGTRIFGPVARE 105
BLAST of CB304892 vs. ExPASy Swiss-Prot
Match: RL14_SACEN (50S ribosomal protein L14 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplN PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15 Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = -3 Query: 236 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAIPGPIGKECAD 532 ADN+GAK + I V G GR A +GD+++ATVK P K V+ AVIVRQ+K RR DG ++ F++NA V++ P GE +G+ I GP+G+E D Sbjct: 11 ADNSGAKEILTIRVLGGSGRRY----AGIGDIIVATVKDAIPGANVKKGEVVKAVIVRQKKEKRRADGSYIRFDENAAVLIKPSGEPRGTRIFGPVGRELRD 108 The following BLAST results are available for this feature:
BLAST of CB304892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 356
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304892 ID=CB304892; Name=CB304892; organism=Citrus sinensis; type=EST; length=618bpback to top |