CB304894 | Citrus Genome Database

Overview


Name	CB304894
Unique Name	CB304894
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	618

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1621	contig	Csv1_Contig1621:592..1209.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 4.963e-59
Identity = 113/196 (57.65%), Postives = 147/196 (75.00%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +  K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK +FG++G   S  VM D  GKSK FGFV+FE  +DA KAVD +NGK+ + ++ YVG+A
Sbjct:   72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266

HSP 2 Score: 148.288 bits (373), Expect = 2.930e-35
Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = -2

Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNLD+   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+    +  YV  A
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368

HSP 3 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 55/176 (31.25%), Postives = 98/176 (55.68%), Query Frame = -2

Query:   36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 560
            +PS       ++++ +L   +    L++ FSP G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNLD+S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A++ +NG   +DR+ +VG+
Sbjct:    2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 172

HSP 4 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = -2

Query:  285 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 530
            N+++KNLD  ID + L   FSPFG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.963e-59
Identity = 113/196 (57.65%), Postives = 147/196 (75.00%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +  K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS FGNILSCK+  D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK +FG++G   S  VM D  GKSK FGFV+FE  +DA KAVD +NGK+ + ++ YVG+A
Sbjct:   72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266

HSP 2 Score: 148.288 bits (373), Expect = 2.930e-35
Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = -2

Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N++IKN  + +D + L D F  FG  LS K+ TD SG+SKGFGFV FE  E AQ A+D++NG  +N KQ++VG   +K ER+T  +K KF              N++VKNLD+   DE L+K F  +GTITSA VM +G G+SK FGFV F + ++A KAV  +NG+    +  YV  A
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368

HSP 3 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 55/176 (31.25%), Postives = 98/176 (55.68%), Query Frame = -2

Query:   36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 560
            +PS       ++++ +L   +    L++ FSP G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNLD+S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A++ +NG   +DR+ +VG+
Sbjct:    2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 172

HSP 4 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = -2

Query:  285 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 530
            N+++KNLD  ID + L   FSPFG I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.463e-58
Identity = 113/196 (57.65%), Postives = 145/196 (73.98%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +  K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS FGNILSCK+  D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F  ++ERE    A   +F NV++KN  E   DE LK+ FG+YG   S  VM D  GKS+ FGFV+FE  +DA KAVD +NGK  + +  +VG+A
Sbjct:   72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA 266

HSP 2 Score: 137.887 bits (346), Expect = 3.960e-32
Identity = 77/179 (43.02%), Postives = 108/179 (60.34%), Query Frame = -2

Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N++IKN  + +D + L + F  +G  LS K+ TD  G+S+GFGFV FE  E AQ A+D +NG  +N K +FVG   +K ER+T  +K KF              N++VKNLD+   DE L+K F  +G+ITSA VM +G G+SK FGFV F + ++A KAV  +NG+    +  YV  A
Sbjct:  192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368

HSP 3 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 56/176 (31.82%), Postives = 98/176 (55.68%), Query Frame = -2

Query:   36 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGK 560
            +PS       ++++ +L   +    L++ FSP G ILS ++  D  + +S G+ +V F+    A+ A+D +N  +I  K V +       +R+    K+   N+F+KNLD+S  ++ L   F  +G I S  V+ D +G SK +GFV+FE  + A +A+D +NG   +DR+ +VG+
Sbjct:    2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGR 172

HSP 4 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = -2

Query:  285 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 530
            N+++KNLD  ID + L   F+PFG+I S K+  +G G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.202e-58
Identity = 109/196 (55.61%), Postives = 147/196 (75.00%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN++P+  +  RIM+S RDPS R+SG GNIFIKNL  +ID+KALHDTFS FG ILSCK+ATD  GQSK FGFV +E  E+A+ AI+ +NGML+ND++VFVG  + K++RE+    IK  F N++VKN+D   ++EDLKK+F  YG ITS  + +D +GKSK FGFVN+E  + A KAV+ LN K+ + ++ YVG+A
Sbjct:  113 LNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRA 308

HSP 2 Score: 127.102 bits (318), Expect = 6.991e-29
Identity = 71/183 (38.80%), Postives = 105/183 (57.38%), Query Frame = -2

Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   NI++KN+D     + L   F+P+G I S  +  D  G+SKGFGFV +E  E+A  A+++LN   IN ++++VG   +K+ER     K   N            N+F+KNLD++   E L++ F  +GTITSA VM D  GKSK FGFV F + ++A KA+  +N + F  +  YV  A
Sbjct:  229 KANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALA 411

HSP 3 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = -2

Query:  282 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 530
            N+FIKNLD +ID + L + F PFG I S ++  D +G+SKGFGFV F + E A  AI ++N  +   K ++V    RK  R +
Sbjct:  337 NLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRS 419

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 9.361e-58
Identity = 104/196 (53.06%), Postives = 147/196 (75.00%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF+ FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KN+D+  T+E+ +++F ++G ITSA + RD +GKS+ FGFVNF   + A  AVD +N K+   ++ YVG+A
Sbjct:  110 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRA 305

HSP 2 Score: 108.997 bits (271), Expect = 1.970e-23
Identity = 57/142 (40.14%), Postives = 84/142 (59.15%), Query Frame = -2

Query:  156 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 545
            K+   N++IKN+D+ +  +   + F  FG I S  ++ D  G+S+GFGFV F   ESAQ A+D++N   I  ++++VG   +K ERE              A K +  N++VKNL +   DE L+++FG YGTITSA VMRD
Sbjct:  226 KANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.597e-57
Identity = 104/196 (53.06%), Postives = 148/196 (75.51%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+T +  +  RIM+S RDP++RK+G GNIFIKNLD +ID+KALHDTF+ FGNILSCK+A D  G SKG+GFV +E  E+A  AI  +NGML+N+K+V+VGH + K++R++    +K  F NV+VKN++   TDE+ +++F ++G +TS+ + RD +GKS+ FGFVNF   + AA+AVD LNGK F  ++ YVG+A
Sbjct:  121 LNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRA 316

HSP 2 Score: 117.857 bits (294), Expect = 4.241e-26
Identity = 75/224 (33.48%), Postives = 107/224 (47.77%), Query Frame = -2

Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT-------KFN-----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--------------------------------------GD---GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   N+++KN++  +  +   + F+ FG + S  +A D  G+S+GFGFV F   E+A  A+D+LNG     + ++VG   +K ERE    K+       K N     N+++KNL +   D+ L+ +F EYG ITSA VMRD                                      GD   GKSK FGFV F N DDA KAV  +N +  D +  YV  A
Sbjct:  237 KANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALA 460

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.597e-57
Identity = 106/196 (54.08%), Postives = 153/196 (78.06%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+T +  K  RIM+S RDPS+RK G+GNI+IKNL  +ID+K+LH+TFS FGNILSCK+ATD +G S+GFGFV FEN+  A++AI+ ++GML+ND++V+V   + K++R++    +K KF NV+VKN+D+ T+ E+ +++FG+YG ITSAV+ +D +GK + FGFVNFE+   AAKAVD LN  +F  ++ YVG+A
Sbjct:   99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRA 294

HSP 2 Score: 118.242 bits (295), Expect = 3.247e-26
Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = -2

Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER-------------ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N+++KN+D+    +   + F  +G I S  +  D  G+ +GFGFV FE+  +A  A+D+LN +    ++++VG   +K ER             E +A K +  N+FVKNLD+S  DE LK+ F  +GTITSA VMRD  G S+ FGFV F   ++A KA+   N +    +  YV  A
Sbjct:  220 NVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLA-KYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397

HSP 3 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 55/173 (31.79%), Postives = 95/173 (54.91%), Query Frame = -2

Query:   42 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYV 557
            P +  SG  ++++  L+ ++    L+D FSP G++ S ++  D  +  S G+ +V F + E+   AI++LN  LI  K   +       +R+    K    N+++KNL  +  ++ L + F  +G I S  V  D +G S+ FGFV+FEN  DA  A++A++G   +D+E YV
Sbjct:   31 PKVETSGA-SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRI----MWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYV 198

HSP 4 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = -2

Query:  288 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 530
            N+F+KNLD SID + L + F+PFG I S K+  D +G S+GFGFV F   E A  AI + N  ++  K ++V    RK+ R
Sbjct:  323 NLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVR 403

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.085e-57
Identity = 104/196 (53.06%), Postives = 147/196 (75.00%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF+ FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KNLD+  ++E+ +++F ++G ITSA + RD +GKS+ FGFVN+   D A  AVD +N K+   ++ YVG+A
Sbjct:  109 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRA 304

HSP 2 Score: 113.235 bits (282), Expect = 1.045e-24
Identity = 75/234 (32.05%), Postives = 109/234 (46.58%), Query Frame = -2

Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-------------------------------------GD--------------GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   N++IKNLD+ I  +     F  FG I S  ++ D  G+S+GFGFV +   +SAQ A+D++N   +  ++++VG   +K ERE              A K +  N++VKNL +   DE L+++F  YGTITSA VMRD                                     GD              GKSK FGFV F + D+A+KAV  +N +  + +  YV  A
Sbjct:  225 KANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALA 458

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.724e-57
Identity = 103/196 (52.55%), Postives = 146/196 (74.49%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF+ FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F N+++KN+D   T+E+ +KIF ++G ITSA + RD +GKS+ FGFVN+   + A  AVD ++ K+   ++ YVG+A
Sbjct:  112 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRA 307

HSP 2 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 63/178 (35.39%), Postives = 95/178 (53.37%), Query Frame = -2

Query:   51 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVD-DAAKAVDALNGKKFDDRE 545
            K+   NI+IKN+D  +  +     F  FG I S  ++ D  G+S+GFGFV +   ESAQ A+D+++   +  ++++VG   +K ERE              A K +  N++VKNL +   DE L+++FG YGTITSA VMRD     +       E  D +  K V+  N KK D+ +
Sbjct:  228 KANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERT------ETPDSEKEKEVNKENEKKEDEEK 399

[Close]

BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 3.557e-57
Identity = 103/196 (52.55%), Postives = 145/196 (73.98%), Query Frame = -2

Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF+ FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F N+++KN+D    DE+ +K+F ++G ITSA + RD +GKS+ FGFVNF   + A  AV+ +N K+   ++ YVG+A
Sbjct:  103 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298

HSP 2 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 72/234 (30.77%), Postives = 109/234 (46.58%), Query Frame = -2

Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD------------------------GDGK---------------------------SKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   NI+IKN+D  ++ +     F  FG I S  ++ D  G+S+GFGFV F   ESAQ A++++N   +  ++++VG   +K ERE              A K +  N++VKNL +   D+ L+++FG YGTITSA VMRD                         +G+                           SK FGFV F + D+A+KAV  +N +  + +  YV  A
Sbjct:  219 KANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 452

The following BLAST results are available for this feature:

BLAST of CB304894 vs. ExPASy Swiss-Prot

BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157


Match Name	E-value	Identity	Description
PABP1_HUMAN	4.963e-59	57.65	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]
PABP1_BOVIN	4.963e-59	57.65	Polyadenylate-binding protein 1 OS=Bos taurus GN=P...	[more]
PABPB_XENLA	2.463e-58	57.65	Polyadenylate-binding protein 1-B OS=Xenopus laevi...	[more]
PABP_PICST	4.202e-58	55.61	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPOR	9.361e-58	53.06	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_NEUCR	1.597e-57	53.06	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASHGO	1.597e-57	54.08	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPTN	2.085e-57	53.06	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_ASPCL	2.724e-57	52.55	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_EMENI	3.557e-57	52.55	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA