CB304894
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13 Identity = 49/169 (28.99%), Postives = 89/169 (52.66%), Query Frame = -2 Query: 72 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS--------------GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENVDDAAKAVDALNG 530 N+ + L +++ + FS G I S K+ D S GQS G+GFV + + A+ A++ LNG+ + +K + V F R + AIK N++V L ++ T ++L+ IF +G I ++ ++++ D ++K GF+ F+ ++A +A+ ALNG Sbjct: 186 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS-FARP---SSDAIKGA--NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13 Identity = 49/169 (28.99%), Postives = 89/169 (52.66%), Query Frame = -2 Query: 72 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS--------------GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENVDDAAKAVDALNG 530 N+ + L +++ + FS G I S K+ D S GQS G+GFV + + A+ A++ LNG+ + +K + V F R + AIK N++V L ++ T ++L+ IF +G I ++ ++++ D ++K GF+ F+ ++A +A+ ALNG Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS-FARP---SSDAIKGA--NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13 Identity = 48/170 (28.24%), Postives = 86/170 (50.59%), Query Frame = -2 Query: 66 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 566 H D R G N+ + L +++ L FS G + S K+ D +G S G+GFV + N + A+ AI+ LNG+ + K + V + + E++ K N+++ L + T +D++ +F +G I S V++ G S+ F+ F+ +A +A+ + NG K Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--VARPSSESI----KDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13 Identity = 54/201 (26.87%), Postives = 93/201 (46.27%), Query Frame = -2 Query: 72 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-------QERETVAIK---------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 614 +N + K +++ ++ PS +K T N +F+ +L I + + F+PFG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK QE T ++ K V+ + TD+ +++ F +G I V + K + FV F + AA A+ ++NG Sbjct: 68 MNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNG 262 HSP 2 Score: 73.1738 bits (178), Expect = 1.198e-12 Identity = 53/173 (30.64%), Postives = 84/173 (48.55%), Query Frame = -2 Query: 30 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE----WYVGKAP 527 +++ NL + + + FS G SCK+ T+ + + FV+F A A+ +NG I K+V V Q+++T + +VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+ W K P Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 178
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13 Identity = 35/109 (32.11%), Postives = 65/109 (59.63%), Query Frame = -2 Query: 294 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSC-KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 617 +LN L K IR+ + +D + N+F+ NLD +D + L+DTFS G ++ ++A D +G+SKG+GFV +++ E+A AI+ +N + +K + V + +++ Sbjct: 71 ILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKRE 179
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_SCHPO (Multiple RNA-binding domain-containing protein 1 OS=Schizosaccharomyces pombe GN=mrd1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13 Identity = 49/169 (28.99%), Postives = 79/169 (46.75%), Query Frame = -2 Query: 78 IRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-----GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDAL 551 I T I++KNL+ S + F P LS I G S GFGFV+F++K SA A+ +NG +++ ++ + G + R+ + K K + +KNL T +D++ + G YG + S V + D ++ F F F +AA A+ AL Sbjct: 613 IESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRAL 781
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_CANAL (Multiple RNA-binding domain-containing protein 1 OS=Candida albicans GN=MRD1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13 Identity = 50/162 (30.86%), Postives = 79/162 (48.77%), Query Frame = -2 Query: 72 IFIKNLDKSIDHKALHDTFSPFGNILSCKIAT------DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 527 +F+KNL+ + +AL D F P + + T G S GFGFV+F KE A AI L+G +++ ++ + KQ T A K + + +KNL T +DL ++FG +G + S V + D ++ F FV F + +A A+ L G Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQL-KLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLEG 779
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13 Identity = 47/186 (25.27%), Postives = 86/186 (46.24%), Query Frame = -2 Query: 66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------------------------------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530 N+ + L +++ + F G I SCK+ D G GQS G+GFV + + + A+ AI+ LNG+ + K + V + + + N++V L ++ T ++L+++F +YG ITS +++ G S+ GF+ F+ +A +A+ LNG+K Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 231
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13 Identity = 47/186 (25.27%), Postives = 86/186 (46.24%), Query Frame = -2 Query: 66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------------------------------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530 N+ + L +++ + F G I SCK+ D G GQS G+GFV + + + A+ AI+ LNG+ + K + V + + + N++V L ++ T ++L+++F +YG ITS +++ G S+ GF+ F+ +A +A+ LNG+K Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 231
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13 Identity = 54/201 (26.87%), Postives = 93/201 (46.27%), Query Frame = -2 Query: 72 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-------QERETVAIK---------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 614 +N + K +++ ++ PS +K T N +F+ +L I + + F+PFG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK QE T ++ K V+ + TD+ +++ F +G I V + K + FV F + AA A+ ++NG Sbjct: 85 MNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNG 279 HSP 2 Score: 68.1662 bits (165), Expect = 3.854e-11 Identity = 56/189 (29.63%), Postives = 85/189 (44.97%), Query Frame = -2 Query: 30 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS-----GQSKGFG-----------FVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE----WYVGKAP 527 +++ NL + + + FS G SCK+ T+ S GF FV+F A A+ +NG I K+V V Q+++T + +VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+ W K P Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 195 The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 157
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bpback to top |