CB304894

Overview
NameCB304894
Unique NameCB304894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 49/169 (28.99%), Postives = 89/169 (52.66%), Query Frame = -2
Query:   72 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS--------------GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENVDDAAKAVDALNG 530
            N+ +  L +++    +   FS  G I S K+  D S              GQS G+GFV +   + A+ A++ LNG+ + +K + V  F R     + AIK    N++V  L ++ T ++L+ IF  +G I ++ ++++   D ++K  GF+ F+  ++A +A+ ALNG
Sbjct:  186 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS-FARP---SSDAIKGA--NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 49/169 (28.99%), Postives = 89/169 (52.66%), Query Frame = -2
Query:   72 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS--------------GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD--GDGKSKCFGFVNFENVDDAAKAVDALNG 530
            N+ +  L +++    +   FS  G I S K+  D S              GQS G+GFV +   + A+ A++ LNG+ + +K + V  F R     + AIK    N++V  L ++ T ++L+ IF  +G I ++ ++++   D ++K  GF+ F+  ++A +A+ ALNG
Sbjct:  150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVS-FARP---SSDAIKGA--NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 48/170 (28.24%), Postives = 86/170 (50.59%), Query Frame = -2
Query:   66 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 566
            H D   R   G  N+ +  L +++    L   FS  G + S K+  D  +G S G+GFV + N + A+ AI+ LNG+ +  K + V   + +   E++    K  N+++  L  + T +D++ +F  +G  I S V++    G S+   F+ F+   +A +A+ + NG K
Sbjct:    8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--VARPSSESI----KDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 54/201 (26.87%), Postives = 93/201 (46.27%), Query Frame = -2
Query:   72 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-------QERETVAIK---------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 614
            +N   +  K +++ ++   PS +K  T N   +F+ +L   I  + +   F+PFG I   ++  D  +G+SKG+GFV F NK  A+NAI  + G  +  +Q+      RK       QE  T  ++          K   V+   +    TD+ +++ F  +G I    V  +     K + FV F   + AA A+ ++NG
Sbjct:   68 MNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNG 262          

HSP 2 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 53/173 (30.64%), Postives = 84/173 (48.55%), Query Frame = -2
Query:   30 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE----WYVGKAP 527
            +++ NL + +    +   FS  G   SCK+ T+ +     + FV+F     A  A+  +NG  I  K+V V        Q+++T    +   +VFV +L    T ED+K  F  +G I+ A V++D   GKSK +GFV+F N  DA  A+  + G+    R+    W   K P
Sbjct:   11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 178          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 35/109 (32.11%), Postives = 65/109 (59.63%), Query Frame = -2
Query:  294 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSC-KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 617
            +LN   L  K IR+  + +D  +      N+F+ NLD  +D + L+DTFS  G ++   ++A D +G+SKG+GFV +++ E+A  AI+ +N   + +K + V +  +++
Sbjct:   71 ILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKRE 179          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_SCHPO (Multiple RNA-binding domain-containing protein 1 OS=Schizosaccharomyces pombe GN=mrd1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 49/169 (28.99%), Postives = 79/169 (46.75%), Query Frame = -2
Query:   78 IRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-----GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDAL 551
            I    T  I++KNL+ S   +     F P    LS  I         G   S GFGFV+F++K SA  A+  +NG +++  ++ +     G     + R+  + K K   + +KNL    T +D++ + G YG + S  V +  D  ++ F F  F    +AA A+ AL
Sbjct:  613 IESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRAL 781          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_CANAL (Multiple RNA-binding domain-containing protein 1 OS=Candida albicans GN=MRD1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 50/162 (30.86%), Postives = 79/162 (48.77%), Query Frame = -2
Query:   72 IFIKNLDKSIDHKALHDTFSPFGNILSCKIAT------DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 527
            +F+KNL+ +   +AL D F P    +   + T       G   S GFGFV+F  KE A  AI  L+G +++  ++ +     KQ   T A   K     + + +KNL    T +DL ++FG +G + S  V +  D  ++ F FV F  + +A  A+  L G
Sbjct:  619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQL-KLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMSQLEG 779          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 47/186 (25.27%), Postives = 86/186 (46.24%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------------------------------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++  +     F   G I SCK+  D                              G GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 231          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 47/186 (25.27%), Postives = 86/186 (46.24%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------------------------------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++  +     F   G I SCK+  D                              G GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 231          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 54/201 (26.87%), Postives = 93/201 (46.27%), Query Frame = -2
Query:   72 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-------QERETVAIK---------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 614
            +N   +  K +++ ++   PS +K  T N   +F+ +L   I  + +   F+PFG I   ++  D  +G+SKG+GFV F NK  A+NAI  + G  +  +Q+      RK       QE  T  ++          K   V+   +    TD+ +++ F  +G I    V  +     K + FV F   + AA A+ ++NG
Sbjct:   85 MNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNG 279          

HSP 2 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 56/189 (29.63%), Postives = 85/189 (44.97%), Query Frame = -2
Query:   30 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS-----GQSKGFG-----------FVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE----WYVGKAP 527
            +++ NL + +    +   FS  G   SCK+ T+         S GF            FV+F     A  A+  +NG  I  K+V V        Q+++T    +   +VFV +L    T ED+K  F  +G I+ A V++D   GKSK +GFV+F N  DA  A+  + G+    R+    W   K P
Sbjct:   11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT----SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 195          
The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
ELAV_DROVI4.117e-1328.99Protein elav OS=Drosophila virilis GN=elav PE=3 SV... [more]
ELAV_DROME4.117e-1328.99Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
ELAV1_XENTR5.377e-1328.24ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
TIAR_HUMAN7.023e-1326.87Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
SAP49_SCHPO7.023e-1332.11Spliceosome-associated protein 49 OS=Schizosacchar... [more]
MRD1_SCHPO7.023e-1328.99Multiple RNA-binding domain-containing protein 1 O... [more]
MRD1_CANAL7.023e-1330.86Multiple RNA-binding domain-containing protein 1 O... [more]
ELAV4_XENTR7.023e-1325.27ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA7.023e-1325.27ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]
TIAR_MOUSE9.172e-1326.87Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA
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