CB304894

Overview
NameCB304894
Unique NameCB304894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1621 contig Csv1_Contig1621:592..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = -2
Query:   54 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 527
            +F+ NL   +D + L   F   G +   ++  +  + QS+GFGFV     E A+ A++  N   +N + + V    R+ ER     +T  +   ++V N+     D  L+++F E+G + SA V+ D + G+S+ FGFV   +  + + A+  L+G+  D R
Sbjct:  138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGR 299          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_ASHGO (Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii GN=MRD1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 48/164 (29.27%), Postives = 79/164 (48.17%), Query Frame = -2
Query:   72 TGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQ------SKGFGFVQFENKESAQNAIDKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 536
            T +IF+KNL+ S     L + F PF   +  ++ T    +      S GFGF++F  KE A   I  ++G +I+    Q+ + H      + +   K K +  + VKNL    T +D+ ++F  +G + S  V +  D  ++ F FV F    +A  A+D L G
Sbjct:  611 TVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQG 774          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_DICDI (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum GN=mrd1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 53/194 (27.32%), Postives = 92/194 (47.42%), Query Frame = -2
Query:   54 KSGTGN----IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSK------GFGFVQFENKESAQNAIDKLNG---------MLINDKQVFVGHFLRKQ----ERETVAIKTK-------FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 545
            K GT N    ++IKNL+    ++ L   F    + ++  IAT  + ++       GFGF++F +K+ A   I KLNG         + ++DK       + K+    E    +IK+         + + +KNL   +T ++++K+F  YG I S  + +  +G  + FGFV F   ++A  A++AL    F  R
Sbjct:  670 KKGTDNNTQFVYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEALGNSHFYGR 863          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBM19_MOUSE (Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 48/163 (29.45%), Postives = 80/163 (49.08%), Query Frame = -2
Query:   78 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD----GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-------GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR--DGDGKSKCFGFVNFENVDDAAKAVDAL 527
            +FIKNL+ S   + L   FS  G I SC I+      G   S GFGFV+++  E AQ A+ +L G  ++  ++ V          L    ++ V  K   + + V+N+       +++++F  +G + +  + +   G G  + FGFV+F    DA KA +AL
Sbjct:  724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 46/167 (27.54%), Postives = 78/167 (46.71%), Query Frame = -2
Query:   84 HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVD 566
            H + +  +     +FI  L      K L D FS FG+++ C +  D  +G+S+GFGFV F+  ES    +D    KLNG +I+ K+            + +  K     +FV  L   T +E +++ FG +G + S  +  D    K + F F+ F+  +   K ++
Sbjct:   84 HTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA-----------KAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 43/160 (26.88%), Postives = 78/160 (48.75%), Query Frame = -2
Query:   66 GTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 539
            G  N+ +  L +++  + L   FS  G + S K+  D  +G S G+GFV +   + A+ AI  LNG+ +  K + V +     E        K  N+++  L  + T +D++ +F  +G  I S V++    G S+   F+ F+   +A +A+ +  G K
Sbjct:   18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE------VIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHK 171          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 44/160 (27.50%), Postives = 79/160 (49.38%), Query Frame = -2
Query:   60 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 527
            + + NL  +   + L + F       S K+  +  G+ KG+ FV+F   E A+ A++  N   I  + + +       ++  +  +  FN     +FV+ L E TT+E L++ F   G+I++ +V     G SK FGFV+F + +DA  A +A+   + D
Sbjct:  463 LIVNNLSYAASEETLQELFK---KATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEID 617          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HNRPM_RAT (Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = -2
Query:   42 FIKNLDKSIDHKALHDTFSP-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-----GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYV 524
            FI N+   +  ++L D      G +   ++  D  G+S+G   V+F+ +ES + A + LN   ++ + + V     G   R+  ++   + +    VFV NLD     + LK++F   G +  A ++ D DGKS+  G V FE   +A +A+   NG+   DR  +V
Sbjct:   73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGS---TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 236          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 46/167 (27.54%), Postives = 77/167 (46.11%), Query Frame = -2
Query:   84 HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVD 566
            H + +  +     +FI  L      K L D FS FG ++ C +  D  +G+S+GFGFV F+  ES    +D    KLNG +I+ K+            + +  K     +FV  L   T +E +++ FG +G + S  +  D    K + F F+ F+  +   K ++
Sbjct:   86 HTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA-----------KAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 46/167 (27.54%), Postives = 77/167 (46.11%), Query Frame = -2
Query:   84 HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVD 566
            H + +  +     +FI  L      K L D FS FG ++ C +  D  +G+S+GFGFV F+  ES    +D    KLNG +I+ K+            + +  K     +FV  L   T +E +++ FG +G + S  +  D    K + F F+ F+  +   K ++
Sbjct:   86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA-----------KAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241          
The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
ROC4_NICSY4.552e-1228.4031 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
MRD1_ASHGO4.552e-1229.27Multiple RNA-binding domain-containing protein 1 O... [more]
MRD1_DICDI5.945e-1227.32Multiple RNA-binding domain-containing protein 1 O... [more]
RBM19_MOUSE7.765e-1229.45Probable RNA-binding protein 19 OS=Mus musculus GN... [more]
HNRPD_RAT7.765e-1227.54Heterogeneous nuclear ribonucleoprotein D0 OS=Ratt... [more]
ELAV1_MOUSE7.765e-1226.88ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
NUCL_CHICK1.014e-1127.50Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1[more]
HNRPM_RAT1.014e-1128.14Heterogeneous nuclear ribonucleoprotein M OS=Rattu... [more]
HNRPD_MOUSE1.014e-1127.54Heterogeneous nuclear ribonucleoprotein D0 OS=Mus ... [more]
HNRPD_HUMAN1.014e-1127.54Heterogeneous nuclear ribonucleoprotein D0 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA
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