CB304894
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12 Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = -2 Query: 54 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 527 +F+ NL +D + L F G + ++ + + QS+GFGFV E A+ A++ N +N + + V R+ ER +T + ++V N+ D L+++F E+G + SA V+ D + G+S+ FGFV + + + A+ L+G+ D R Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGR 299
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_ASHGO (Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii GN=MRD1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12 Identity = 48/164 (29.27%), Postives = 79/164 (48.17%), Query Frame = -2 Query: 72 TGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQ------SKGFGFVQFENKESAQNAIDKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 536 T +IF+KNL+ S L + F PF + ++ T + S GFGF++F KE A I ++G +I+ Q+ + H + + K K + + VKNL T +D+ ++F +G + S V + D ++ F FV F +A A+D L G Sbjct: 611 TVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSEAENAMDQLQG 774
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_DICDI (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum GN=mrd1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12 Identity = 53/194 (27.32%), Postives = 92/194 (47.42%), Query Frame = -2 Query: 54 KSGTGN----IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSK------GFGFVQFENKESAQNAIDKLNG---------MLINDKQVFVGHFLRKQ----ERETVAIKTK-------FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 545 K GT N ++IKNL+ ++ L F + ++ IAT + ++ GFGF++F +K+ A I KLNG + ++DK + K+ E +IK+ + + +KNL +T ++++K+F YG I S + + +G + FGFV F ++A A++AL F R Sbjct: 670 KKGTDNNTQFVYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEALGNSHFYGR 863
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBM19_MOUSE (Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12 Identity = 48/163 (29.45%), Postives = 80/163 (49.08%), Query Frame = -2 Query: 78 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD----GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-------GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR--DGDGKSKCFGFVNFENVDDAAKAVDAL 527 +FIKNL+ S + L FS G I SC I+ G S GFGFV+++ E AQ A+ +L G ++ ++ V L ++ V K + + V+N+ +++++F +G + + + + G G + FGFV+F DA KA +AL Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12 Identity = 46/167 (27.54%), Postives = 78/167 (46.71%), Query Frame = -2 Query: 84 HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVD 566 H + + + +FI L K L D FS FG+++ C + D +G+S+GFGFV F+ ES +D KLNG +I+ K+ + + K +FV L T +E +++ FG +G + S + D K + F F+ F+ + K ++ Sbjct: 84 HTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA-----------KAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12 Identity = 43/160 (26.88%), Postives = 78/160 (48.75%), Query Frame = -2 Query: 66 GTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 539 G N+ + L +++ + L FS G + S K+ D +G S G+GFV + + A+ AI LNG+ + K + V + E K N+++ L + T +D++ +F +G I S V++ G S+ F+ F+ +A +A+ + G K Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE------VIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHK 171
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11 Identity = 44/160 (27.50%), Postives = 79/160 (49.38%), Query Frame = -2 Query: 60 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 527 + + NL + + L + F S K+ + G+ KG+ FV+F E A+ A++ N I + + + ++ + + FN +FV+ L E TT+E L++ F G+I++ +V G SK FGFV+F + +DA A +A+ + D Sbjct: 463 LIVNNLSYAASEETLQELFK---KATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEID 617
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HNRPM_RAT (Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4) HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11 Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = -2 Query: 42 FIKNLDKSIDHKALHDTFSP-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV-----GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYV 524 FI N+ + ++L D G + ++ D G+S+G V+F+ +ES + A + LN ++ + + V G R+ ++ + + VFV NLD + LK++F G + A ++ D DGKS+ G V FE +A +A+ NG+ DR +V Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKAGRLGS---TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 236
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11 Identity = 46/167 (27.54%), Postives = 77/167 (46.11%), Query Frame = -2 Query: 84 HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVD 566 H + + + +FI L K L D FS FG ++ C + D +G+S+GFGFV F+ ES +D KLNG +I+ K+ + + K +FV L T +E +++ FG +G + S + D K + F F+ F+ + K ++ Sbjct: 86 HTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA-----------KAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11 Identity = 46/167 (27.54%), Postives = 77/167 (46.11%), Query Frame = -2 Query: 84 HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVD 566 H + + + +FI L K L D FS FG ++ C + D +G+S+GFGFV F+ ES +D KLNG +I+ K+ + + K +FV L T +E +++ FG +G + S + D K + F F+ F+ + K ++ Sbjct: 86 HSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA-----------KAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241 The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 157
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bpback to top |