CB304894
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11 Identity = 48/181 (26.52%), Postives = 81/181 (44.75%), Query Frame = -2 Query: 66 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 566 H D R G N+ + L +++ L FS G + S K+ D G S G+GFV + N + A+ AI+ LNG+ + K + V E K N+++ L + T +D++ +F +G I S V++ G S+ F+ F+ +A +A+ + NG K Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE------SIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 182
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 51/188 (27.13%), Postives = 87/188 (46.28%), Query Frame = -2 Query: 33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE---TVAIKTKF------------------NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527 +F+ NL ++D L F GN+ ++ D +G+S+GFGFV + + A + NG ++ + + V +RE + ++ F N V+V NL D L+ +F E G + A V+ D D G+SK FGFV +++ + A+ +L+G D R+ V +A Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11 Identity = 47/156 (30.13%), Postives = 78/156 (50.00%), Query Frame = -2 Query: 60 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 527 + + NL S + L + F I K+ + G+SKG+ F++F + E A+ A++ N M I + + + L+ A +FVK L E TT+E LK+ F G++ + +V G SK FGFV+F + +DA A +A+ + D Sbjct: 488 LVLSNLSYSATEETLQEVFEKATFI---KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 636
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11 Identity = 48/163 (29.45%), Postives = 83/163 (50.92%), Query Frame = -2 Query: 54 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN---NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 527 +F+ NL +D + L F G + ++ + + +S+GFGFV E A+ A++ LNG ++ +Q+ V + E A + F V+V NL L+++F E+G + SA V+ D + G+S+ FGFV + + A+ AL+G+ D R Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-APRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGR 218
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11 Identity = 47/156 (30.13%), Postives = 78/156 (50.00%), Query Frame = -2 Query: 60 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 527 + + NL S + L + F I K+ + G+SKG+ F++F + E A+ A++ N M I + + + L+ A +FVK L E TT+E LK+ F G++ + +V G SK FGFV+F + +DA A +A+ + D Sbjct: 491 LVLSNLSYSATEETLQEVFEKATFI---KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 639
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11 Identity = 48/156 (30.77%), Postives = 73/156 (46.79%), Query Frame = -2 Query: 84 GNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK----LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVD 533 G +FI L +L D FS FG I C + D + + S+GFGFV F + S + + L+ I+ K F R + T+ +FV L +T ED+K+ F ++G + A++M D + + FGFV FEN D K + Sbjct: 21 GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAF-------PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11 Identity = 48/156 (30.77%), Postives = 73/156 (46.79%), Query Frame = -2 Query: 84 GNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK----LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVD 533 G +FI L +L D FS FG I C + D + + S+GFGFV F + S + + L+ I+ K F R + T+ +FV L +T ED+K+ F ++G + A++M D + + FGFV FEN D K + Sbjct: 21 GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAF-------PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROAA_MOUSE (Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus GN=Hnrnpab PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = -2 Query: 63 SIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKF 554 S + G +F+ L K L D F+ FG ++ C I D +G+S+GFGF+ F++ S + +D +L+G +I+ K+ K +FV L+ T+E +++ FG++G I + + D K + F F+ F+ D K ++ KKF Sbjct: 68 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAM------------AMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE----KKF 221
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus GN=Rbms1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = -2 Query: 69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530 N++I+ L + + L P+G I+S K D + + KG+GFV F++ +AQ A+ L + + ++QE++ N+++ NL S +++L+ + +G + S V+RD G S+ GF E+ + + NGK Sbjct: 63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 204
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = -2 Query: 42 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYV 530 +IFI NL+ + + L D F + + I G SK FG+V F ++E + A+ KL G I +V + + + +T K + ++ +FVKN+ STT E+L++IF I + DG +K +V F N D+A KA++ G + + R +V Sbjct: 234 SIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRIGNSKKFGYVDFSSEEEVEKAL-KLTGKKILGTEVKIEKAMAFDKNKTAENKKERDSRTLFVKNIPYSTTVEELQEIFENAKDIR---IPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFV 394 HSP 2 Score: 68.1662 bits (165), Expect = 3.854e-11 Identity = 40/160 (25.00%), Postives = 80/160 (50.00%), Query Frame = -2 Query: 54 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 527 +F+KN+ S + L + F N +I T G +KG +V+F N++ A A+++ G I + +FV K + + ++ + V NL S T++ L+++F + +++ + G++K F F+ F + +DA A+D+ N + + R Sbjct: 327 LFVKNIPYSTTVEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEK----ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGR 479 The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 157
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bpback to top |