CB304894

Overview
NameCB304894
Unique NameCB304894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1621 contig Csv1_Contig1621:592..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 48/181 (26.52%), Postives = 81/181 (44.75%), Query Frame = -2
Query:   66 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 566
            H D   R   G  N+ +  L +++    L   FS  G + S K+  D              G S G+GFV + N + A+ AI+ LNG+ +  K + V       E        K  N+++  L  + T +D++ +F  +G  I S V++    G S+   F+ F+   +A +A+ + NG K
Sbjct:    8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE------SIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 182          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 51/188 (27.13%), Postives = 87/188 (46.28%), Query Frame = -2
Query:   33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE---TVAIKTKF------------------NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527
            +F+ NL  ++D   L   F   GN+   ++  D  +G+S+GFGFV   +    + A  + NG  ++ + + V       +RE   +   ++ F                  N V+V NL     D  L+ +F E G +  A V+ D D G+SK FGFV +++  +   A+ +L+G   D R+  V +A
Sbjct:   93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.324e-11
Identity = 47/156 (30.13%), Postives = 78/156 (50.00%), Query Frame = -2
Query:   60 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 527
            + + NL  S   + L + F     I   K+  +  G+SKG+ F++F + E A+ A++  N M I  + + +   L+       A       +FVK L E TT+E LK+ F   G++ + +V     G SK FGFV+F + +DA  A +A+   + D
Sbjct:  488 LVLSNLSYSATEETLQEVFEKATFI---KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 636          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 48/163 (29.45%), Postives = 83/163 (50.92%), Query Frame = -2
Query:   54 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN---NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 527
            +F+ NL   +D + L   F   G +   ++  +  + +S+GFGFV     E A+ A++ LNG  ++ +Q+ V     +   E  A +  F     V+V NL        L+++F E+G + SA V+ D + G+S+ FGFV   +  +   A+ AL+G+  D R
Sbjct:   57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-APRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGR 218          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 47/156 (30.13%), Postives = 78/156 (50.00%), Query Frame = -2
Query:   60 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 527
            + + NL  S   + L + F     I   K+  +  G+SKG+ F++F + E A+ A++  N M I  + + +   L+       A       +FVK L E TT+E LK+ F   G++ + +V     G SK FGFV+F + +DA  A +A+   + D
Sbjct:  491 LVLSNLSYSATEETLQEVFEKATFI---KVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 639          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 48/156 (30.77%), Postives = 73/156 (46.79%), Query Frame = -2
Query:   84 GNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK----LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVD 533
            G +FI  L       +L D FS FG I  C +  D + + S+GFGFV F +  S    + +    L+   I+ K  F         R    + T+   +FV  L  +T  ED+K+ F ++G +  A++M D    + + FGFV FEN D   K  +
Sbjct:   21 GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAF-------PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.730e-11
Identity = 48/156 (30.77%), Postives = 73/156 (46.79%), Query Frame = -2
Query:   84 GNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK----LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVD 533
            G +FI  L       +L D FS FG I  C +  D + + S+GFGFV F +  S    + +    L+   I+ K  F         R    + T+   +FV  L  +T  ED+K+ F ++G +  A++M D    + + FGFV FEN D   K  +
Sbjct:   21 GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAF-------PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROAA_MOUSE (Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus GN=Hnrnpab PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = -2
Query:   63 SIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID----KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKF 554
            S  +   G +F+  L      K L D F+ FG ++ C I  D  +G+S+GFGF+ F++  S +  +D    +L+G +I+ K+                 K     +FV  L+   T+E +++ FG++G I +  +  D    K + F F+ F+  D   K ++    KKF
Sbjct:   68 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAM------------AMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE----KKF 221          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = -2
Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N++I+ L  +   + L     P+G I+S K   D  + + KG+GFV F++  +AQ A+  L    +  +        ++QE++         N+++ NL  S  +++L+ +   +G + S  V+RD  G S+  GF   E+ +     +   NGK
Sbjct:   63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 204          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = -2
Query:   42 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYV 530
            +IFI NL+ + +   L D    F +  +  I     G SK FG+V F ++E  + A+ KL G  I   +V +   +   + +T   K + ++  +FVKN+  STT E+L++IF     I    +    DG +K   +V F N D+A KA++   G + + R  +V
Sbjct:  234 SIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRIGNSKKFGYVDFSSEEEVEKAL-KLTGKKILGTEVKIEKAMAFDKNKTAENKKERDSRTLFVKNIPYSTTVEELQEIFENAKDIR---IPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFV 394          

HSP 2 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 40/160 (25.00%), Postives = 80/160 (50.00%), Query Frame = -2
Query:   54 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 527
            +F+KN+  S   + L + F    N    +I T   G +KG  +V+F N++ A  A+++  G  I  + +FV     K +        + ++  + V NL  S T++ L+++F +     +++ +    G++K F F+ F + +DA  A+D+ N  + + R
Sbjct:  327 LFVKNIPYSTTVEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEK----ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGR 479          
The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
ELV1A_XENLA1.014e-1126.52ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-... [more]
ROC1_ARATH1.324e-1127.13Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
NUCL_MESAU1.324e-1130.13Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2[more]
ROC1_SPIOL1.730e-1129.4528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
NUCL_RAT1.730e-1130.13Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3[more]
MSI2H_MOUSE1.730e-1130.77RNA-binding protein Musashi homolog 2 OS=Mus muscu... [more]
MSI2H_HUMAN1.730e-1130.77RNA-binding protein Musashi homolog 2 OS=Homo sapi... [more]
ROAA_MOUSE2.259e-1127.06Heterogeneous nuclear ribonucleoprotein A/B OS=Mus... [more]
RBMS1_RAT2.259e-1125.81RNA-binding motif, single-stranded-interacting pro... [more]
NUCL_XENLA2.259e-1130.30Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA
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