CB304894
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS3_PONAB (RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo abelii GN=RBMS3 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = -2 Query: 69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530 N++I+ L + L P+G I+S K D + Q KG+GFV F++ +AQ A+ L + + ++QE++ N+++ NL S +++L+ + +G + S ++RD +G S+ GF E+ + + NGK Sbjct: 61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMA------KQQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 202
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = -2 Query: 69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530 N++I+ L + L P+G I+S K D + Q KG+GFV F++ +AQ A+ L + + ++QE++ N+++ NL S +++L+ + +G + S ++RD +G S+ GF E+ + + NGK Sbjct: 57 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMA------KQQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 198
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS3_HUMAN (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = -2 Query: 69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530 N++I+ L + L P+G I+S K D + Q KG+GFV F++ +AQ A+ L + + ++QE++ N+++ NL S +++L+ + +G + S ++RD +G S+ GF E+ + + NGK Sbjct: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMA------KQQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 203
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS2_MOUSE (RNA-binding motif, single-stranded-interacting protein 2 OS=Mus musculus GN=Rbms2 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 49/195 (25.13%), Postives = 86/195 (44.10%), Query Frame = -2 Query: 69 NNKSIRIMYSHRDPSIRKS----------GTG--------NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 596 NNK + + PS R S G+G N++I+ L + L P+G I+S K D + + KG+GFV F++ SAQ A+ L + + ++QE++ N+++ NL S +++L+ + +G + S ++RD G S+ GF E+ + + NGK Sbjct: 19 NNKKLYVAQQMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNGK 200
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS1_MOUSE (RNA-binding motif, single-stranded-interacting protein 1 OS=Mus musculus GN=Rbms1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = -2 Query: 69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530 N++I+ L + + L P+G I+S K D + + KG+GFV F++ +AQ A+ L + + ++QE++ N+++ NL S +++L+ + +G + S V+RD G S+ GF E+ + + NGK Sbjct: 63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGK 204
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBM19_HUMAN (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 48/167 (28.74%), Postives = 81/167 (48.50%), Query Frame = -2 Query: 78 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD----GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-----------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR--DGDGKSKCFGFVNFENVDDAAKAVDAL 527 +FIKNL+ + L + FS G + SC I+ G S GFGFV++ E AQ A+ +L G +++ ++ V R ER T V K + + V+N+ +++++F +G + + + + G G + FGFV+F DA +A +AL Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEV----RISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 53/192 (27.60%), Postives = 94/192 (48.96%), Query Frame = -2 Query: 60 TPLNNKSIRIMYS-----HRDPSIRKSGTGN-----IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 605 T ++ +SI + Y+ ++D K+ T + + + NL S + L + F I K+ + +G+SKG+ F++F + E A+ A++ N I + + + L+ A +FVK L E TT+E LK+ F G++ + +V G SK FGFV+F + +DA A +A+ + D Sbjct: 454 TEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 638
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 53/192 (27.60%), Postives = 94/192 (48.96%), Query Frame = -2 Query: 60 TPLNNKSIRIMYS-----HRDPSIRKSGTGN-----IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 605 T ++ +SI + Y+ ++D K+ T + + + NL S + L + F I K+ + +G+SKG+ F++F + E A+ A++ N I + + + L+ A +FVK L E TT+E LK+ F G++ + +V G SK FGFV+F + +DA A +A+ + D Sbjct: 453 TEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 637
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 53/192 (27.60%), Postives = 94/192 (48.96%), Query Frame = -2 Query: 60 TPLNNKSIRIMYS-----HRDPSIRKSGTGN-----IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 605 T ++ +SI + Y+ ++D K+ T + + + NL S + L + F I K+ + +G+SKG+ F++F + E A+ A++ N I + + + L+ A +FVK L E TT+E LK+ F G++ + +V G SK FGFV+F + +DA A +A+ + D Sbjct: 452 TEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 636
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_NEUCR (Multiple RNA-binding domain-containing protein 1 OS=Neurospora crassa GN=mrd-1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11 Identity = 46/176 (26.14%), Postives = 84/176 (47.73%), Query Frame = -2 Query: 78 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR------KQERETVAIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDAL 563 RD + + T ++F++NL+ S + L D F + K+ T G S GFGFV F K+ AQ A+ ++G +++ ++ V R ++ RE +A K + + VKNL T ++++ +F YG + + + + + S+ F F F +A A ++L Sbjct: 589 RDDAEEQLETSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISVKASHRGLDAAEERRREDMAKKAANQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNSL 764 The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 157
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bpback to top |