CB304894

Overview
NameCB304894
Unique NameCB304894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS3_PONAB (RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo abelii GN=RBMS3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = -2
Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N++I+ L      + L     P+G I+S K   D  + Q KG+GFV F++  +AQ A+  L    +  +        ++QE++         N+++ NL  S  +++L+ +   +G + S  ++RD +G S+  GF   E+ +     +   NGK
Sbjct:   61 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMA------KQQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 202          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = -2
Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N++I+ L      + L     P+G I+S K   D  + Q KG+GFV F++  +AQ A+  L    +  +        ++QE++         N+++ NL  S  +++L+ +   +G + S  ++RD +G S+  GF   E+ +     +   NGK
Sbjct:   57 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMA------KQQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 198          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS3_HUMAN (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = -2
Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N++I+ L      + L     P+G I+S K   D  + Q KG+GFV F++  +AQ A+  L    +  +        ++QE++         N+++ NL  S  +++L+ +   +G + S  ++RD +G S+  GF   E+ +     +   NGK
Sbjct:   62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMA------KQQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 203          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS2_MOUSE (RNA-binding motif, single-stranded-interacting protein 2 OS=Mus musculus GN=Rbms2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 49/195 (25.13%), Postives = 86/195 (44.10%), Query Frame = -2
Query:   69 NNKSIRIMYSHRDPSIRKS----------GTG--------NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 596
            NNK + +      PS R S          G+G        N++I+ L      + L     P+G I+S K   D +  + KG+GFV F++  SAQ A+  L    +  +        ++QE++         N+++ NL  S  +++L+ +   +G + S  ++RD  G S+  GF   E+ +     +   NGK
Sbjct:   19 NNKKLYVAQQMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGASRGVGFARMESTEKCEAIITHFNGK 200          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBMS1_MOUSE (RNA-binding motif, single-stranded-interacting protein 1 OS=Mus musculus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 40/155 (25.81%), Postives = 75/155 (48.39%), Query Frame = -2
Query:   69 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGK 530
            N++I+ L  +   + L     P+G I+S K   D  + + KG+GFV F++  +AQ A+  L    +  +        ++QE++         N+++ NL  S  +++L+ +   +G + S  V+RD  G S+  GF   E+ +     +   NGK
Sbjct:   63 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGK 204          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBM19_HUMAN (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 48/167 (28.74%), Postives = 81/167 (48.50%), Query Frame = -2
Query:   78 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD----GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-----------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR--DGDGKSKCFGFVNFENVDDAAKAVDAL 527
            +FIKNL+     + L + FS  G + SC I+      G   S GFGFV++   E AQ A+ +L G +++  ++ V    R  ER T           V  K   + + V+N+       +++++F  +G + +  + +   G G  + FGFV+F    DA +A +AL
Sbjct:  732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEV----RISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 53/192 (27.60%), Postives = 94/192 (48.96%), Query Frame = -2
Query:   60 TPLNNKSIRIMYS-----HRDPSIRKSGTGN-----IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 605
            T ++ +SI + Y+     ++D    K+ T +     + + NL  S   + L + F     I   K+  + +G+SKG+ F++F + E A+ A++  N   I  + + +   L+       A       +FVK L E TT+E LK+ F   G++ + +V     G SK FGFV+F + +DA  A +A+   + D
Sbjct:  454 TEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 638          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 53/192 (27.60%), Postives = 94/192 (48.96%), Query Frame = -2
Query:   60 TPLNNKSIRIMYS-----HRDPSIRKSGTGN-----IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 605
            T ++ +SI + Y+     ++D    K+ T +     + + NL  S   + L + F     I   K+  + +G+SKG+ F++F + E A+ A++  N   I  + + +   L+       A       +FVK L E TT+E LK+ F   G++ + +V     G SK FGFV+F + +DA  A +A+   + D
Sbjct:  453 TEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 637          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 53/192 (27.60%), Postives = 94/192 (48.96%), Query Frame = -2
Query:   60 TPLNNKSIRIMYS-----HRDPSIRKSGTGN-----IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFD 605
            T ++ +SI + Y+     ++D    K+ T +     + + NL  S   + L + F     I   K+  + +G+SKG+ F++F + E A+ A++  N   I  + + +   L+       A       +FVK L E TT+E LK+ F   G++ + +V     G SK FGFV+F + +DA  A +A+   + D
Sbjct:  452 TEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE--LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 636          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_NEUCR (Multiple RNA-binding domain-containing protein 1 OS=Neurospora crassa GN=mrd-1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 46/176 (26.14%), Postives = 84/176 (47.73%), Query Frame = -2
Query:   78 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR------KQERETVAIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDAL 563
            RD +  +  T ++F++NL+ S   + L D F      +  K+ T       G   S GFGFV F  K+ AQ A+  ++G +++  ++ V    R      ++ RE +A K   +   + VKNL    T ++++ +F  YG + +  + +  +  S+ F F  F    +A  A ++L
Sbjct:  589 RDDAEEQLETSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISVKASHRGLDAAEERRREDMAKKAANQGTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNSL 764          
The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RBMS3_PONAB2.951e-1125.81RNA-binding motif, single-stranded-interacting pro... [more]
RBMS3_MOUSE2.951e-1125.81RNA-binding motif, single-stranded-interacting pro... [more]
RBMS3_HUMAN2.951e-1125.81RNA-binding motif, single-stranded-interacting pro... [more]
RBMS2_MOUSE2.951e-1125.13RNA-binding motif, single-stranded-interacting pro... [more]
RBMS1_MOUSE2.951e-1125.81RNA-binding motif, single-stranded-interacting pro... [more]
RBM19_HUMAN2.951e-1128.74Probable RNA-binding protein 19 OS=Homo sapiens GN... [more]
NUCL_PONAB2.951e-1127.60Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MACFA2.951e-1127.60Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN2.951e-1127.60Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
MRD1_NEUCR2.951e-1126.14Multiple RNA-binding domain-containing protein 1 O... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA
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