CB304894

Overview
NameCB304894
Unique NameCB304894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1621 contig Csv1_Contig1621:592..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.557e-57
Identity = 104/196 (53.06%), Postives = 145/196 (73.98%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF+ FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+NDK+VFVGH + K++R++    +K  F NV++KNLD    D++ +K+F ++G ITSA + RD +GKS+ FGFVNF   + A  AV+ +N K+   ++ YVG+A
Sbjct:  115 LNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRA 310          

HSP 2 Score: 108.997 bits (271), Expect = 1.970e-23
Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = -2
Query:  156 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE------------TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 545
            K+   N++IKNLD  ID       F  FG I S  ++ D  G+S+GFGFV F   ESAQ A++++N   I  ++++VG   +K ERE              A K +  N++VKNL +   DE L+++FG YGTITSA VMRD
Sbjct:  231 KANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.067e-57
Identity = 110/196 (56.12%), Postives = 146/196 (74.49%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  +  K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS FGNILSCK+  D +G SKG+ FV FE +E+A  AI+K+NGML+ND++VFVG F  ++ERE  +  K K F NV++KN  E   DE LK++F ++G   S  VMRD +GKSK FGFV++E  +DA KAV+ +NGK+   +  +VG+A
Sbjct:   72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266          

HSP 2 Score: 136.732 bits (343), Expect = 8.823e-32
Identity = 74/179 (41.34%), Postives = 110/179 (61.45%), Query Frame = -2
Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N++IKN  + +D ++L + FS FG  LS K+  D +G+SKGFGFV +E  E A  A++++NG  I+ K +FVG   +K ER+   +K KF              N+++KNLD++  DE L+K F  +G+ITSA VM + DG+SK FGFV F + ++A KAV  +NG+    +  YV  A
Sbjct:  192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ-AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368          

HSP 3 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = -2
Query:  285 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 530
            N++IKNLD +ID + L   FSPFG+I S K+  +  G+SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+
Sbjct:  295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERK 375          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 7.924e-57
Identity = 107/196 (54.59%), Postives = 145/196 (73.98%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+T +  K  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF+ FGNILSCK+A D  G SKG+GFV +E  E+A NAI  +NGML+N+K+VFVGH + K+ER  +   +K  F N++VKN+D   TDED +++F ++G ITSA + RD  GKS+ FGFVN+   + AA AVD LN  +F  ++ YVG+A
Sbjct:  109 LNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRA 304          

HSP 2 Score: 102.834 bits (255), Expect = 1.412e-21
Identity = 73/236 (30.93%), Postives = 108/236 (45.76%), Query Frame = -2
Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK----------TKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRD-----------------------------------------GD-----------GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   NI++KN+D  +  +   + F   G+I S  IA D  G+S+GFGFV +   E+A  A+D LN +    ++++VG   +K ERE    K          +K+   N+++KNL++   DE L+ +F  +GTITSA V++RD                                         GD           GKSK FGFV F N D+A KAV  +N K  + +  YV  A
Sbjct:  225 KANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALA 460          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.352e-56
Identity = 103/196 (52.55%), Postives = 147/196 (75.00%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+T +  +  RIM+S RDPS+RK GTGN+FIKNLD +ID+KALHDTFS FG ILSCK+A D  G +KG+GFV F++ ESA  AI+ +NGML+NDK+V+VGH + ++ER++   A+K  F NV++KNLD   T+++   +FG++G ITS  +++D + K + FGFVN+ N + A KAVD LN K++  ++ YVG+A
Sbjct:  141 LNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRA 336          

HSP 2 Score: 124.79 bits (312), Expect = 3.469e-28
Identity = 72/183 (39.34%), Postives = 98/183 (53.55%), Query Frame = -2
Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-------TKFN-----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   N++IKNLD  I  +   D F  FG I S  +  D + + +GFGFV + N E AQ A+D+LN      K+++VG   +K ERE    K        K N     N+F+KNL +   DE LK  F  +GTITSA +M D  GKSK FGFV +   ++A KAV  +N +    +  YV  A
Sbjct:  257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439          

HSP 3 Score: 93.5893 bits (231), Expect = 8.565e-19
Identity = 57/190 (30.00%), Postives = 97/190 (51.05%), Query Frame = -2
Query:   39 TPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVG 605
            TP N  S+        PS     + ++++  LD S+    L + F+  G + S ++  D  + +S G+ +V F N E  + A+D+LN  LI  +   +       +R+    K    NVF+KNLD +  ++ L   F  +G I S  V  D  G +K +GFV+F++V+ A  A++ +NG   +D++ YVG
Sbjct:   62 TPTNASSVAT------PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI----MWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG 241          

HSP 4 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = -2
Query:  282 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 530
            N+FIKNL   +D + L   FS FG I S KI TD  G+SKGFGFV +   E A  A+ ++N  ++  K ++V    RK+ R +
Sbjct:  365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRS 447          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.765e-56
Identity = 106/196 (54.08%), Postives = 146/196 (74.49%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+ P+  +  RIM+S RDPS R+SG GNIFIKNL  +ID+KALHDTFS FG ILSCK+ATD  GQSK FGFV +E  E+A+ AI+ +NGML+ND++VFVG  + K++RE+    +K  F N++VKN+D + ++E  +K+F  +G ITS  + +D DGKSK FGFVNFE+ + A KAV+ LN K+ + ++ YVG+A
Sbjct:  113 LNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRA 308          

HSP 2 Score: 131.724 bits (330), Expect = 2.838e-30
Identity = 75/183 (40.98%), Postives = 109/183 (59.56%), Query Frame = -2
Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER--------ETVAI----KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   NI++KN+D +   ++    FSPFG I S  +  D  G+SKGFGFV FE+ ESA  A+++LN   IN ++++VG   +K+ER        E V +    K +  N+FVKNLD++   E L++ F  +GTITSA VM D  GKSK FGFV F   ++A KA+  +N +  + +  YV  A
Sbjct:  229 KANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALA 411          

HSP 3 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = -2
Query:  282 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 530
            N+F+KNLD +ID + L + F PFG I S K+  D +G+SKGFGFV F   E A  AI ++N  +IN K ++V    RK  R +
Sbjct:  337 NLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRS 419          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 217.624 bits (553), Expect = 3.933e-56
Identity = 113/197 (57.36%), Postives = 143/197 (72.59%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE-TVAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKF-DDREWYVGKA 614
            +NF  + NK IRIM+S RDPS+R+SG GN+FIKNLD++ID+KA++DTFS FGNILSCK+ATD  G SKG+GFV FE +E+A  +IDK+NGML+N K+V+VG F+ ++ERE  +  K K F NV+VKN  E   DE LK+ F  YG ITS  VM   DGKSK FGFV FE  + A  AV ALNGK   + +  YV +A
Sbjct:   63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARA 259          

HSP 2 Score: 122.479 bits (306), Expect = 1.722e-27
Identity = 70/180 (38.89%), Postives = 101/180 (56.11%), Query Frame = -2
Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND-KQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N+++KN  +  D + L + F P+G I S K+ +   G+SKGFGFV FE  E+A+ A+  LNG  + + K ++V    +K ER+   +K KF              N++VKNLD++  D+ L+  F  YG ITSA VM D +G+SK FGFV F    +A  AV  LNG+    +  YV  A
Sbjct:  184 NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQ-ELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362          

HSP 3 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = -2
Query:  285 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 530
            N+++KNLD +ID   L   FSP+GNI S K+ TD  G+SKGFGFV F     A  A+ +LNG ++  K ++V    RK+ER+
Sbjct:  288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERK 369          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.708e-56
Identity = 101/196 (51.53%), Postives = 147/196 (75.00%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+T +  +  RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDTF+ FGNILSCK+A D +G SKG+GFV +E  E+A  AI  +N ML+N+K+V+VG+ + K++R++    +K  F N++VKN+    TDE+ + +F +YG +TS+ + RD +GKS+ FGFVNF   + AAKAV+ LNGK+F  ++ YVG+A
Sbjct:  126 LNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRA 321          

HSP 2 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 74/228 (32.46%), Postives = 106/228 (46.49%), Query Frame = -2
Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT-------KFN-----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD------------------------------------------GD---GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   NI++KN+      +   D F+ +G++ S  +A D  G+S+GFGFV F   E A  A+++LNG     + ++VG   +K ERE    K+       K N     N+++KNL +   D+ L+++F EYG ITSA VMRD                                          GD   GKSK FGFV F N DDA KAV  +N +  + +  YV  A
Sbjct:  242 KANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALA 469          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.144e-55
Identity = 108/194 (55.67%), Postives = 134/194 (69.07%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN TP+  K+ RIM+S RDPS+RKSG GN+FIKNLDK IDHKAL+DTFS FGNILSCK+ TD    SKGFGFV +E +ESA  AI K+NGM+IN ++VFVG F   +ER     + KF NVF KNL E    + LK++  +YG IT+  +M D  GKSK FGF NFE+ + A   V+  NGK F  +  Y G+A
Sbjct:   71 LNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQ-PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRA 263          

HSP 2 Score: 124.02 bits (310), Expect = 5.918e-28
Identity = 63/172 (36.63%), Postives = 102/172 (59.30%), Query Frame = -2
Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV---AIKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            N+F KNL + +    L +    +G I +  I  D  G+SKGFGF  FE+ E+A+N ++  NG + + K ++ G   +K ERE       +TK+   N+++KN+D+S  ++ L+++F ++GTITSA+VM+D     SK FGFV +   D+A +AV  +NG+    +  YV  A
Sbjct:  189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALA 360          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.952e-55
Identity = 108/196 (55.10%), Postives = 141/196 (71.94%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            +NF  L  + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS FGNILSCK+A D  G S+GFGFV FE  E+AQ AI+ +NGML+ND++VFVGHF  ++ERE    A   +F N++VKNL     ++ L+ +F ++G + S  VMRD  G S+CFGFVNFE  ++A KAV  +NGK+   R  Y G+A
Sbjct:   72 MNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA 266          

HSP 2 Score: 130.568 bits (327), Expect = 6.323e-30
Identity = 73/179 (40.78%), Postives = 104/179 (58.10%), Query Frame = -2
Query:   33 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 530
            NI++KNL   +D + L D FS FG +LS K+  D SG S+ FGFV FE  E AQ A+  +NG  ++ + ++ G   ++ ER+   +K +F              N++VKNLD+S  D+ L+K F  YG ITSA VM +G G SK FGFV F + ++A KAV  +NG+    +  YV  A
Sbjct:  192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN-ELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368          

HSP 3 Score: 87.8113 bits (216), Expect = 4.700e-17
Identity = 51/173 (29.48%), Postives = 96/173 (55.49%), Query Frame = -2
Query:   39 SGTG----NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVG 542
            SG+G    ++++ +L   +    L++ FSP G ILS ++  D  + +S G+ ++ F+    A+ A+D +N  ++  + + +       +R+    K+   N+F+KNL++S  ++ L   F  +G I S  V  D  G S+ FGFV+FE  + A +A++ +NG   +DR+ +VG
Sbjct:    4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG 171          

HSP 4 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  279 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 530
            N+++KNLD SID   L   FSP+G I S K+ T+G G SKGFGFV F + E A  A+ ++NG ++  K ++V    RK+ER+ +
Sbjct:  295 NLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAI 377          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.549e-55
Identity = 104/196 (53.06%), Postives = 148/196 (75.51%), Query Frame = -2
Query:   33 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET--VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 614
            LN+TP+  +  RIM+S RDPS R+SG GNIFIKNL  +ID+KALHDTFS FG ILS K+ATD  GQSK FGFV +E +E+AQ AI+ +NGML+ND++V+VG  + K++RE+    +K  + N++VKN+D + T+++ +++F  +G ITS  + +D +GKSK FGFVNFE  + AAKAV+ LN K+ + ++ YVG+A
Sbjct:  128 LNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRA 323          

HSP 2 Score: 132.494 bits (332), Expect = 1.664e-30
Identity = 73/184 (39.67%), Postives = 107/184 (58.15%), Query Frame = -2
Query:   33 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 545
            K+   NI++KN+D +   K   + F+PFG I S  +  D  G+SKGFGFV FE  E+A  A+++LN   IN ++++VG   +K+ER T  +K ++              N+FVKNLDE    E L++ F  +GTITS+ VM D  GKSK FGFV F   ++A KA+  +N +  + +  YV  A
Sbjct:  244 KANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRER-TEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALA 426          

HSP 3 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = -2
Query:  282 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 530
            N+F+KNLD+ ID + L + F PFG I S K+  D +G+SKGFGFV F   E A  AI ++N  ++N K ++V    RK  R +
Sbjct:  352 NLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRS 434          
The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
PABP_ASPNC3.557e-5753.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP4_HUMAN6.067e-5756.12Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP_PHANO7.924e-5754.59Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_SCHPO1.352e-5652.55Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANAL1.765e-5654.08Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME3.933e-5657.36Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP_CHAGB6.708e-5651.53Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1A_DICDI1.144e-5555.67Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
PAP1L_HUMAN1.952e-5555.10Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABP_LODEL2.549e-5553.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA
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