CB304894

Overview
NameCB304894
Unique NameCB304894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1621 contig Csv1_Contig1621:592..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 45/172 (26.16%), Postives = 91/172 (52.91%), Query Frame = -2
Query:   33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527
            +++ ++   +    +   F+PFG I S  ++ D  + + KGF FV++E  E+AQ A++++N +++  + + VG      + + +  +       FN ++V ++ +  +D+D+K +F  +G I S  + RD   GK K +GF+ +E    +  AV ++N      +   VGKA
Sbjct:  136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 45/172 (26.16%), Postives = 91/172 (52.91%), Query Frame = -2
Query:   33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527
            +++ ++   +    +   F+PFG I S  ++ D  + + KGF FV++E  E+AQ A++++N +++  + + VG      + + +  +       FN ++V ++ +  +D+D+K +F  +G I S  + RD   GK K +GF+ +E    +  AV ++N      +   VGKA
Sbjct:  130 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 45/172 (26.16%), Postives = 91/172 (52.91%), Query Frame = -2
Query:   33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527
            +++ ++   +    +   F+PFG I S  ++ D  + + KGF FV++E  E+AQ A++++N +++  + + VG      + + +  +       FN ++V ++ +  +D+D+K +F  +G I S  + RD   GK K +GF+ +E    +  AV ++N      +   VGKA
Sbjct:  136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 45/172 (26.16%), Postives = 91/172 (52.91%), Query Frame = -2
Query:   33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527
            +++ ++   +    +   F+PFG I S  ++ D  + + KGF FV++E  E+AQ A++++N +++  + + VG      + + +  +       FN ++V ++ +  +D+D+K +F  +G I S  + RD   GK K +GF+ +E    +  AV ++N      +   VGKA
Sbjct:  131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 45/172 (26.16%), Postives = 91/172 (52.91%), Query Frame = -2
Query:   33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK-----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527
            +++ ++   +    +   F+PFG I S  ++ D  + + KGF FV++E  E+AQ A++++N +++  + + VG      + + +  +       FN ++V ++ +  +D+D+K +F  +G I S  + RD   GK K +GF+ +E    +  AV ++N      +   VGKA
Sbjct:  102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 44/157 (28.03%), Postives = 84/157 (53.50%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++        F   G+I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V  L ++ + ++++++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 47/157 (29.94%), Postives = 86/157 (54.78%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+    L +++  + L   F   G I SCK+  D  +GQS G+GFV + + + A+ AI+ LNG+ +  K + V +          +   +  N++V  L ++ T ++L+++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.800e-15
Identity = 48/159 (30.19%), Postives = 84/159 (52.83%), Query Frame = -2
Query:   75 KSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENVDDAAKAVDALN 545
            ++   N+ +  L + +  + L+  F   G I +C+I  D  +G S G+ FV F ++  +Q AI  LNG+ + +K++ V +     E        K  N++V NL  + TD+ L  IFG+YG+I    ++RD   G+ +   FV +   ++A +A+ ALN
Sbjct:  121 RASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 52/176 (29.55%), Postives = 88/176 (50.00%), Query Frame = -2
Query:   33 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK---------TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENVDDAAKAVDALNGKKFDDREWYVGKA 527
            IF+ NL  S D  AL + F   GN+   ++  D  +G+S+GFGFV   +KE  + A  + NG  ++ + + V      ++RE  + +            N V+V NL      + L+ +F E G +  A V+ D D G+S+ FGFV + + ++   A+++L+G   + R   V  A
Sbjct:   89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 44/157 (28.03%), Postives = 84/157 (53.50%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++        F   G+I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V  L ++ + ++++++F +YG  ITS +++    G S+  GF+ F+   +A +A+  LNG+K
Sbjct:   40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190          
The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
PUF60_RAT5.745e-1526.16Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB5.745e-1526.16Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE5.745e-1526.16Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN5.745e-1526.16Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN5.745e-1526.16Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]
ELAV3_MOUSE5.745e-1528.03ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV2_RAT5.745e-1529.94ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
SXL_DROME9.800e-1530.19Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
ROC1_NICSY1.280e-1429.5529 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ELAV3_HUMAN1.672e-1428.03ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA
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