CB304894
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13 Identity = 53/187 (28.34%), Postives = 88/187 (47.06%), Query Frame = -2 Query: 36 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLN---GMLIN-----------DKQVFVGHFLRKQERETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR----EWYVGK 527 +F+ L S + L + FS G + C + T+ GS +GFG+V F E Q A+ ++ G IN K+ ++E A K K + + ++NL +++DLK +F ++G + + R DGK + FGFV F+N+ +A KA+ +N K+ R +W V K Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAK 192
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: GBP2_YEAST (Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces cerevisiae GN=GBP2 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13 Identity = 52/175 (29.71%), Postives = 83/175 (47.43%), Query Frame = -2 Query: 54 RKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH----------FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 548 +++ +IF++NL + L + F G ++ I T G +G G V+F ES Q+AI K +G L D+++ V F +K RE + VF+ NL S + LK +F E G + A V D +G S+ FG V + D+ +A+D NG + + R Sbjct: 117 KRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITS-KGHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEI---DNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGR 287
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: SF3B4_DICDI (Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13 Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = -2 Query: 285 VLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSPFGNIL-SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 617 V+ F L NK I+I ++D K G N+FI NLD +D + LHDTFS FG I+ + K+ D +G SKGF F+ F++ E++ AI+ +N + +K + V + +K E Sbjct: 73 VMKFVRLFNKEIKIKKENKD----KVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNE 181
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABPX_SCHPO (mRNA export factor crp79 OS=Schizosaccharomyces pombe GN=crp79 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13 Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = -2 Query: 198 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSID--HKALHDTFSPFGNILSCKIAT-DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 617 ++++ L S I S DPS N+++KNLD ++ L D FSPFG+ILS +A SG SKG+GFV F E+A A D LNGM++ K++FV RK +R ++ F N K E T +D K +F Sbjct: 361 IVHWDSLRESSPSIPNSPIDPS-------NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDR-IRRLQAFFAN---KPTSEQTAQQDNKALF 492
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13 Identity = 49/170 (28.82%), Postives = 85/170 (50.00%), Query Frame = -2 Query: 66 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 566 H D R G N+ + L +++ L FS G + S K+ D +G S G+GFV + N + A+ AI+ LNG+ + K + V + ET+ K N+++ L + T +D++ +F +G I S V++ G S+ F+ F+ +A +A+ + NG K Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--FARPSSETI----KDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13 Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = -2 Query: 30 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL-----RKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE----WYVGKAP 527 +++ NL + + + FS G +CK+ D +G + FV+F A A+ +NG I K+V V +K + + T+ + +VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+ W K P Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187 HSP 2 Score: 68.9366 bits (167), Expect = 2.259e-11 Identity = 46/170 (27.06%), Postives = 81/170 (47.65%), Query Frame = -2 Query: 72 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ--------------ERETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 530 ++F+ +L I + + F+PFG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK + V ++ NN V+ + T++ +++ F +G I V D K + FV F + + AA A+ ++NG Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNG 271
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13 Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = -2 Query: 30 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL-----RKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE----WYVGKAP 527 +++ NL + + + FS G +CK+ D +G + FV+F A A+ +NG I K+V V +K + + T+ + +VFV +L T ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+ W K P Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187 HSP 2 Score: 67.3958 bits (163), Expect = 6.573e-11 Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = -2 Query: 72 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--QERETVAIKTKFNN--------------VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 530 ++F+ +L I + + F+PFG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK + T TK + V+ + T++ +++ F +G I V D K + FV F + + AA A+ ++NG Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNG 271
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13 Identity = 44/158 (27.85%), Postives = 84/158 (53.16%), Query Frame = -2 Query: 66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGK-SKCFGFVNFENVDDAAKAVDALNGKK 530 N+ + L +++ + F G I SCK+ D +GQS G+GFV + + A AI+ LNG+ + K + V + + + N++V +L ++ ++++++F +YG ITS +++ G S+ GF+ F+ +A +A+ LNG+K Sbjct: 36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQK 187
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_KLULA (Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces lactis GN=MRD1 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13 Identity = 51/173 (29.48%), Postives = 81/173 (46.82%), Query Frame = -2 Query: 72 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 560 D ++ T +IFIKNL+ S + L + F PF + ++ T G S GFGF +F+ KE A I + G +++ Q+ + H + K K N + VKNL T +D+ ++F +G + S V + D ++ F FV F +A A+D L G Sbjct: 642 DDDVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQG 814
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13 Identity = 55/182 (30.22%), Postives = 90/182 (49.45%), Query Frame = -2 Query: 72 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI-----DKLNGMLIN-------------DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNG 557 PS + T +F+ L ++D + L F +G I+ ++ DG SG+SKG+G+V FE E+A+ A+ +++G ++N Q G+F + + + VFV NL + T++DL FG G I S + D G+ K FG+V F ++D A K V+ +NG Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPS-------DTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNG 428 The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 157
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bpback to top |