CB304894

Overview
NameCB304894
Unique NameCB304894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1621 contig Csv1_Contig1621:592..1209. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 53/187 (28.34%), Postives = 88/187 (47.06%), Query Frame = -2
Query:   36 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLN---GMLIN-----------DKQVFVGHFLRKQERETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR----EWYVGK 527
            +F+  L  S   + L + FS  G +  C + T+ GS   +GFG+V F   E  Q A+ ++    G  IN            K+          ++E  A K K  +    + ++NL    +++DLK +F ++G +    + R  DGK + FGFV F+N+ +A KA+  +N K+   R    +W V K
Sbjct:    6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAK 192          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: GBP2_YEAST (Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces cerevisiae GN=GBP2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 52/175 (29.71%), Postives = 83/175 (47.43%), Query Frame = -2
Query:   54 RKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH----------FLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDR 548
            +++   +IF++NL      + L + F   G ++   I T   G  +G G V+F   ES Q+AI K +G L  D+++ V            F +K  RE +        VF+ NL  S   + LK +F E G +  A V  D +G S+ FG V +   D+  +A+D  NG + + R
Sbjct:  117 KRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITS-KGHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEI---DNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGR 287          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: SF3B4_DICDI (Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = -2
Query:  285 VLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSPFGNIL-SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 617
            V+ F  L NK I+I   ++D    K   G N+FI NLD  +D + LHDTFS FG I+ + K+  D +G SKGF F+ F++ E++  AI+ +N   + +K + V +  +K   E
Sbjct:   73 VMKFVRLFNKEIKIKKENKD----KVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNE 181          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: PABPX_SCHPO (mRNA export factor crp79 OS=Schizosaccharomyces pombe GN=crp79 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = -2
Query:  198 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSID--HKALHDTFSPFGNILSCKIAT-DGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 617
            ++++  L   S  I  S  DPS       N+++KNLD ++      L D FSPFG+ILS  +A    SG SKG+GFV F   E+A  A D LNGM++  K++FV    RK +R    ++  F N   K   E T  +D K +F
Sbjct:  361 IVHWDSLRESSPSIPNSPIDPS-------NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDR-IRRLQAFFAN---KPTSEQTAQQDNKALF 492          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 49/170 (28.82%), Postives = 85/170 (50.00%), Query Frame = -2
Query:   66 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNGKK 566
            H D   R   G  N+ +  L +++    L   FS  G + S K+  D  +G S G+GFV + N + A+ AI+ LNG+ +  K + V     +   ET+    K  N+++  L  + T +D++ +F  +G  I S V++    G S+   F+ F+   +A +A+ + NG K
Sbjct:    8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS--FARPSSETI----KDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = -2
Query:   30 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL-----RKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE----WYVGKAP 527
            +++ NL + +    +   FS  G   +CK+  D +G    + FV+F     A  A+  +NG  I  K+V V         +K    +  + T+ +    +VFV +L    T ED+K  F  +G I+ A V++D   GKSK +GFV+F N  DA  A+  + G+    R+    W   K P
Sbjct:    9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187          

HSP 2 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 46/170 (27.06%), Postives = 81/170 (47.65%), Query Frame = -2
Query:   72 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ--------------ERETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 530
            ++F+ +L   I  + +   F+PFG I   ++  D  +G+SKG+GFV F NK  A+NAI ++ G  +  +Q+      RK                 + V  ++  NN  V+   +    T++ +++ F  +G I    V  D     K + FV F + + AA A+ ++NG
Sbjct:  107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNG 271          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = -2
Query:   30 IFIKNLDKSIDHKALHDTFSPFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL-----RKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNGKKFDDRE----WYVGKAP 527
            +++ NL + +    +   FS  G   +CK+  D +G    + FV+F     A  A+  +NG  I  K+V V         +K    +  + T+ +    +VFV +L    T ED+K  F  +G I+ A V++D   GKSK +GFV+F N  DA  A+  + G+    R+    W   K P
Sbjct:    9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187          

HSP 2 Score: 67.3958 bits (163), Expect = 6.573e-11
Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = -2
Query:   72 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK--QERETVAIKTKFNN--------------VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 530
            ++F+ +L   I  + +   F+PFG I   ++  D  +G+SKG+GFV F NK  A+NAI ++ G  +  +Q+      RK    + T    TK  +              V+   +    T++ +++ F  +G I    V  D     K + FV F + + AA A+ ++NG
Sbjct:  107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNG 271          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 44/158 (27.85%), Postives = 84/158 (53.16%), Query Frame = -2
Query:   66 NIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGK-SKCFGFVNFENVDDAAKAVDALNGKK 530
            N+ +  L +++  +     F   G I SCK+  D  +GQS G+GFV + +   A  AI+ LNG+ +  K + V +          +   +  N++V +L ++   ++++++F +YG  ITS +++    G  S+  GF+ F+   +A +A+  LNG+K
Sbjct:   36 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSY------ARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQK 187          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: MRD1_KLULA (Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces lactis GN=MRD1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 51/173 (29.48%), Postives = 81/173 (46.82%), Query Frame = -2
Query:   72 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATD------GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENVDDAAKAVDALNG 560
            D  ++   T +IFIKNL+ S   + L + F PF   +  ++ T       G   S GFGF +F+ KE A   I  + G +++    Q+ + H          + K K N   + VKNL    T +D+ ++F  +G + S  V +  D  ++ F FV F    +A  A+D L G
Sbjct:  642 DDDVQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQG 814          
BLAST of CB304894 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 55/182 (30.22%), Postives = 90/182 (49.45%), Query Frame = -2
Query:   72 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSPFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI-----DKLNGMLIN-------------DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENVDDAAKAVDALNG 557
            PS   + T  +F+  L  ++D + L   F  +G I+  ++  DG SG+SKG+G+V FE  E+A+ A+      +++G ++N               Q   G+F  +    +       + VFV NL  + T++DL   FG  G I S  +  D   G+ K FG+V F ++D A K V+ +NG
Sbjct:  255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPS-------DTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNG 428          
The following BLAST results are available for this feature:
BLAST of CB304894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RBM28_HUMAN1.848e-1328.34RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE... [more]
GBP2_YEAST1.848e-1329.71Single-strand telomeric DNA-binding protein GBP2 O... [more]
SF3B4_DICDI2.414e-1338.05Splicing factor 3B subunit 4 OS=Dictyostelium disc... [more]
PABPX_SCHPO2.414e-1337.76mRNA export factor crp79 OS=Schizosaccharomyces po... [more]
ELV1B_XENLA2.414e-1328.82ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
TIA1_MOUSE3.152e-1329.44Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN3.152e-1329.44Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
ELAV3_XENTR3.152e-1327.85ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
MRD1_KLULA4.117e-1329.48Multiple RNA-binding domain-containing protein 1 O... [more]
GAR2_SCHPO4.117e-1330.22Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304894 ID=CB304894; Name=CB304894; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTTTTTTTTTTTTTTNNTTTTTTTTTGGGGCTTTTCCAACGTACCA
TTCTCTGTCATCAAATTTCTTTCCATTAAGAGCATCGACAGCTTTGGCAG
CATCATCTACATTTTCAAAATTCACAAATCCAAAACACTTGGATTTTCCA
TCTCCATCCCTCATCACTACTGCACTGGTAATTGTTCCATACTCACCAAA
AATTTTCTTCAAATCTTCATCTGTAGTTGACTCATCAAGGTTTTTGACAA
ATACGTTATTGAATTTTGTTTTAATTGCTACAGTTTCTCTTTCCTGCTTA
CGAAGAAAGTGCCCAACGAACACTTGTTTATCATTAATAAGCATGCCATT
TAACTTATCAATAGCATTTTGAGCAGATTCTTTGTTCTCAAATTGCACAA
AACCGAAACCTTTGGACTGGCCAGAACCATCAGTAGCTATCTTACAAGAA
AGAATGTTTCCGAATGGAGAAAATGTATCGTGTAATGCTTTGTGATCAAT
AGACTTGTCCAAATTCTTGATAAATATGTTCCCAGTACCGCTTTTCCGAA
TACTAGGATCCCGATGGGAATACATGATTCTAATGGACTTATTATTAAGT
GGAGTGAAGTTAAGAACA
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