CB304901

Overview
NameCB304901
Unique NameCB304901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12693 contig Csv1_Contig12693:279..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.113e-34
Identity = 69/97 (71.13%), Postives = 85/97 (87.63%), Query Frame = -3 
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            +GID+RVRR+FK  +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + VTN  ARLRS+E E
Sbjct:   39 RGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135
[Close]
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_DROAC (60S ribosomal protein L32 OS=Drosophila acanthoptera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.066e-34
Identity = 71/97 (73.20%), Postives = 80/97 (82.47%), Query Frame = -3 
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            KGID+RVRR+FK   LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+ KRKEIVERA QL V +TN  ARLRSQE E
Sbjct:   38 KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNREYCGEIAHGVSSNKRKEIVERAKQLSVRLTNPNARLRSQENE 134
[Close]
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_BOVIN (60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 4.066e-34
Identity = 68/97 (70.10%), Postives = 85/97 (87.63%), Query Frame = -3 
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            +GID+RVRR+FK  +LMPNIGYGS+KKT+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAHNVS+K RK IVERAAQL + +TN  ARLRS+E E
Sbjct:   39 RGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135
[Close]
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_DROPS (60S ribosomal protein L32 OS=Drosophila pseudoobscura pseudoobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -3 
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            KGID+RVRR+FK   LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   38 KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_DROPE (60S ribosomal protein L32 OS=Drosophila persimilis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -3 
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            KGID+RVRR+FK   LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   38 KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_DROMI (60S ribosomal protein L32 OS=Drosophila miranda GN=RpL32 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -3 
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            KGID+RVRR+FK   LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   38 KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_DROAZ (60S ribosomal protein L32 OS=Drosophila azteca GN=RpL32 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -3 
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            KGID+RVRR+FK   LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   38 KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_DROAI (60S ribosomal protein L32 OS=Drosophila affinis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -3 
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            KGID+RVRR+FK   LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   38 KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_DROSU (60S ribosomal protein L32 OS=Drosophila subobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.936e-34
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -3 
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            KGID+RVRR+FK   LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   38 KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_DROMD (60S ribosomal protein L32 OS=Drosophila madeirensis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.936e-34
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = -3 
Query:  309 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 599
            KGID+RVRR+FK   LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   38 KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
The following BLAST results are available for this feature:
BLAST of CB304901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL32_HUMAN3.113e-3471.1360S ribosomal protein L32 OS=Homo sapiens GN=RPL32... [more]
RL32_DROAC4.066e-3473.2060S ribosomal protein L32 OS=Drosophila acanthopte... [more]
RL32_BOVIN4.066e-3470.1060S ribosomal protein L32 OS=Bos taurus GN=RPL32 P... [more]
RL32_DROPS5.310e-3472.1660S ribosomal protein L32 OS=Drosophila pseudoobsc... [more]
RL32_DROPE5.310e-3472.1660S ribosomal protein L32 OS=Drosophila persimilis... [more]
RL32_DROMI5.310e-3472.1660S ribosomal protein L32 OS=Drosophila miranda GN... [more]
RL32_DROAZ5.310e-3472.1660S ribosomal protein L32 OS=Drosophila azteca GN=... [more]
RL32_DROAI5.310e-3472.1660S ribosomal protein L32 OS=Drosophila affinis GN... [more]
RL32_DROSU6.936e-3472.1660S ribosomal protein L32 OS=Drosophila subobscura... [more]
RL32_DROMD6.936e-3472.1660S ribosomal protein L32 OS=Drosophila madeirensi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_G07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_G07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304901 ID=CB304901; Name=CB304901; organism=Citrus sinensis; type=EST; length=604bp
TTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTGCTATTAAACATCATACGC
TTAACATTGCCCACTAATAGTTATGGAAAATATGCAAAACAATGTTAATA
AAAGGCTTGGCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCAT
GCTCCGCAAAAAACAACAAATTCAAAATATCATTCAGGTGACAAAAATAA
AAAATACATCATAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAA
CCTAGGAAACATTTGGCCAAAAGCAAACACTAACATAAAATATAGAAACC
AATTTTTACTCCTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGAC
CACAACATCCAATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGG
TTGATACGTTGTGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATC
AAGAGTTCCAGTTCATTGACATTGTGCACGACAAACTTCTTAAATCCATT
AGGCAGATAGTGGCGTGTTTTCTTGTCCGAGCCGTAACCAATATTGGGCA
TCAGAACACANNCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTC
NGCC
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