CB304901

Overview
NameCB304901
Unique NameCB304901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12693 contig Csv1_Contig12693:279..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_YEAST (60S ribosomal protein L32 OS=Saccharomyces cerevisiae GN=RPL32 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  327 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 599
            KGIDS VRR+F+  +  P IGYGS+KKT+   P+G K F+V NV +LE L MH +TY AEIAHN+S K R  I+ RA  L + VTN   RL
Sbjct:   36 KGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20
Identity = 47/91 (51.65%), Postives = 68/91 (74.73%), Query Frame = -3
Query:  327 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 599
            KGIDS VRR+F+  +  PNIGYGS+KKT+   P G+K ++V NV +L++L++H ++Y AEIA +VS++KR EIV +A +L V VTN   +L
Sbjct:   37 KGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTKSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_CANGA (60S ribosomal protein L32 OS=Candida glabrata GN=RPL32 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.825e-19
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  327 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 599
            KGIDS VRR+F+  +  P IGYGS+KKT+   P+G K  +V N+ +LE L MH ++Y AEIAHNVS+K R  ++ RA  L V VTN   RL
Sbjct:   37 KGIDSVVRRRFRGNISEPTIGYGSNKKTKFMSPSGHKVVLVSNLKDLETLTMHTKSYAAEIAHNVSSKNRVTLLARAKALGVKVTNAKGRL 127          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_ENCCU (60S ribosomal protein L32 OS=Encephalitozoon cuniculi GN=RPL32 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  309 GIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 596
            GIDS+VR++ K    MP+I Y   K+ RH LPNG +K  + N+N+L  L   NR YC EIAH V  +KR  IV RA +L + + N  ARL  + EE
Sbjct:   44 GIDSKVRKRCKGEREMPSIKYKKPKEIRHLLPNGLRKVRIFNINDLTPLTSLNRFYCGEIAHAVGARKRIAIVNRAKELGICLLNGNARLIPEIEE 139          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays GN=RPL32 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.504e-12
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = -3
Query:  309 TYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 434
            TYCAEIAHNVSTKKRKEIVERAAQLD+VV  KLAR  SQE+E
Sbjct:    1 TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_PYRFU (50S ribosomal protein L32e OS=Pyrococcus furiosus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  342 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 599
            KGIDS++R K K     P+IG+ S K  R   P+G+++ +VHNV ELE L    +   A IAH V  KKR EI++RA +L + V N
Sbjct:   44 KGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLN 127          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_PYRHO (50S ribosomal protein L32e OS=Pyrococcus horikoshii GN=rpl32e PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  342 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 599
            KGIDS++R K K     P+IG+ S +  R   P+G+++ ++HNV ELE L    R   A IAH V  KKR EI++RA +L + V N
Sbjct:   44 KGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELERL--DPRRQAARIAHTVGKKKRIEILKRAEELGIKVLN 127          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_METKA (50S ribosomal protein L32e OS=Methanopyrus kandleri GN=rpl32 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = -3
Query:  342 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 599
            KG  S++RRK K    MPN GYGS KK R   P+G+++ +V+N  +LE   +  +   A IA  V  +KR+EI+E+A +L +VV N
Sbjct:   47 KGRHSKMRRKLKSKPKMPNPGYGSPKKVRGLHPSGYEEVLVYNPKDLE--KIDPKRQAARIASRVGRRKRQEILEKAEELGIVVLN 130          
BLAST of CB304901 vs. ExPASy Swiss-Prot
Match: RL32_PYRAB (50S ribosomal protein L32e OS=Pyrococcus abyssi GN=rpl32e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = -3
Query:  342 KGIDSRVRRKFKXCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTN 599
            KGIDS++R K K     P+IG+ S +  R   P+G+++ ++HNV ELE L    +   A IAH V  KKR EI++RA +L + V N
Sbjct:   44 KGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELEKL--DPKRQAARIAHTVGKKKRIEILKRAQELGIKVLN 127          
The following BLAST results are available for this feature:
BLAST of CB304901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL32_YEAST1.149e-2054.9560S ribosomal protein L32 OS=Saccharomyces cerevis... [more]
RL32_CANAL3.342e-2051.6560S ribosomal protein L32 OS=Candida albicans GN=R... [more]
RL32_CANGA4.825e-1952.7560S ribosomal protein L32 OS=Candida glabrata GN=R... [more]
RL32_ENCCU8.518e-1646.8860S ribosomal protein L32 OS=Encephalitozoon cunic... [more]
RL32_MAIZE1.504e-1285.7160S ribosomal protein L32 (Fragment) OS=Zea mays G... [more]
RL32_PYRFU9.746e-1245.3550S ribosomal protein L32e OS=Pyrococcus furiosus ... [more]
RL32_PYRHO2.836e-1144.1950S ribosomal protein L32e OS=Pyrococcus horikoshi... [more]
RL32_METKA4.837e-1143.0250S ribosomal protein L32e OS=Methanopyrus kandler... [more]
RL32_PYRAB6.317e-1143.0250S ribosomal protein L32e OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_G07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_G07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304901 ID=CB304901; Name=CB304901; organism=Citrus sinensis; type=EST; length=604bp
TTTTNNNTTTTTTTTTTTTTTTTTTTTTTTTGCTATTAAACATCATACGC
TTAACATTGCCCACTAATAGTTATGGAAAATATGCAAAACAATGTTAATA
AAAGGCTTGGCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCAT
GCTCCGCAAAAAACAACAAATTCAAAATATCATTCAGGTGACAAAAATAA
AAAATACATCATAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAA
CCTAGGAAACATTTGGCCAAAAGCAAACACTAACATAAAATATAGAAACC
AATTTTTACTCCTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGAC
CACAACATCCAATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGG
TTGATACGTTGTGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATC
AAGAGTTCCAGTTCATTGACATTGTGCACGACAAACTTCTTAAATCCATT
AGGCAGATAGTGGCGTGTTTTCTTGTCCGAGCCGTAACCAATATTGGGCA
TCAGAACACANNCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTC
NGCC
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