CB304941

Overview
NameCB304941
Unique NameCB304941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304941_ssr121 microsatellite CB304941_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6967 contig Csv1_Contig6967:59..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_CRYNE (FK506-binding protein 1 OS=Cryptococcus neoformans GN=FPR1 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.751e-18
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  206 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 538
            MG+  + ++ G+G   P  G  VT+H  G   +G    KF S +D G  PF  +IG+G VI+GWDEGV  + +G+ A L C+PDYAYGA GFP   I PNS L FE+++L++
Sbjct:    1 MGVTVENISAGDGKTFPQPGDSVTIHYVGTLLDGS---KFDSSRDRGT-PFVCRIGQGQVIRGWDEGVPQLSIGQKANLICTPDYAYGARGFPP-VIPPNSTLKFEVELLKI 107          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1A_BOVIN (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Bos taurus GN=FKBP1A PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 6.655e-18
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG++ + ++PG+G   P  GQ   VH TG  ++G   +KF S +D  + PF F +GK  VI+GW+EGV  M VG+ A+L  SPDYAYGA G P   I PN+ L F++++L++E
Sbjct:    1 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDRNK-PFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPNATLIFDVELLKLE 108          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1A_ASPFU (FK506-binding protein 1A OS=Aspergillus fumigatus GN=fpr1A PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.691e-18
Identity = 55/112 (49.11%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  206 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 538
            MG+ K++ +PGNG   P  G  VT+H TG   +G    KF S  D  + PF  QIG G VIKGWDEGV  M +GE A L  +PDY YGA GFP   I  NS L FE+++L +
Sbjct:    1 MGVTKELKSPGNGVDFPKKGDFVTIHYTGRLTDGS---KFDSSVDRNE-PFQTQIGTGRVIKGWDEGVPQMSLGEKAVLTITPDYGYGARGFPP-VIPGNSTLIFEVELLGI 107          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP1_DICDI (FK506-binding protein 1 OS=Dictyostelium discoideum GN=fkbp1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.483e-17
Identity = 51/109 (46.79%), Postives = 66/109 (60.55%), Query Frame = -1
Query:  212 MGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVL 538
            MG+E  I+  G G  P  G  VTVH  G   NG +   F S +  GQ PF F++G G VIKGWDEGV  M+VGE ++L  SPD+ YGA G     I PN+ L FE++++
Sbjct:    1 MGVEITIIKEGKGNIPPVGSNVTVHHAGTLTNGTV---FDSSRKRGQ-PFNFKLGAGQVIKGWDEGVAKMKVGETSKLTISPDFGYGARG-AGGVIPPNATLVFEVELI 104          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1A_RABIT (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Oryctolagus cuniculus GN=FKBP1A PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.483e-17
Identity = 50/113 (44.25%), Postives = 74/113 (65.49%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG++ + ++PG+G   P  GQ   VH TG  ++G   +KF S +D  + PF F +GK  VI+GW+EGV  M VG+ A+L  SPDYAYGA G P   I P++ L F++++L++E
Sbjct:    1 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDRNK-PFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 108          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1A_HUMAN (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo sapiens GN=FKBP1A PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.483e-17
Identity = 50/113 (44.25%), Postives = 74/113 (65.49%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG++ + ++PG+G   P  GQ   VH TG  ++G   +KF S +D  + PF F +GK  VI+GW+EGV  M VG+ A+L  SPDYAYGA G P   I P++ L F++++L++E
Sbjct:    1 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDRNK-PFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKLE 108          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1B_HUMAN (Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Homo sapiens GN=FKBP1B PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.936e-17
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG+E + ++PG+G   P  GQ   VH TG  +NG   +KF S +D  + PF F+IGK  VIKG++EG   M +G+ A+L C+PD AYGA G P   I PN+ L F++++L +E
Sbjct:    1 MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNG---KKFDSSRDRNK-PFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHP-GVIPPNATLIFDVELLNLE 108          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1B_BOVIN (Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Bos taurus GN=FKBP1B PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.936e-17
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG+E + ++PG+G   P  GQ   VH TG  +NG   +KF S +D  + PF F+IGK  VIKG++EG   M +G+ A+L C+PD AYGA G P   I PN+ L F++++L +E
Sbjct:    1 MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNG---KKFDSSRDRNK-PFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHP-GVIPPNATLIFDVELLNLE 108          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1B_RAT (Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Rattus norvegicus GN=Fkbp1b PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.303e-17
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG+E + ++PG+G   P  GQ   VH TG  +NG   +KF S +D  + PF F+IGK  VIKG++EG   M +G+ A+L C+PD AYGA G P   I PN+ L F++++L +E
Sbjct:    1 MGVEIETISPGDGRTFPKKGQICVVHYTGMLQNG---KKFDSSRDRNK-PFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYGATGHP-GVIPPNATLIFDVELLNLE 108          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1B_MOUSE (Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Mus musculus GN=Fkbp1b PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.303e-17
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG+E + ++PG+G   P  GQ   VH TG  +NG   +KF S +D  + PF F+IGK  VIKG++EG   M +G+ A+L C+PD AYGA G P   I PN+ L F++++L +E
Sbjct:    1 MGVEIETISPGDGRTFPKKGQICVVHYTGMLQNG---KKFDSSRDRNK-PFKFRIGKQEVIKGFEEGTAQMSLGQRAKLTCTPDVAYGATGHP-GVIPPNATLIFDVELLSLE 108          
The following BLAST results are available for this feature:
BLAST of CB304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FKBP_CRYNE1.751e-1845.54FK506-binding protein 1 OS=Cryptococcus neoformans... [more]
FKB1A_BOVIN6.655e-1845.13Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Bos ... [more]
FKB1A_ASPFU8.691e-1849.11FK506-binding protein 1A OS=Aspergillus fumigatus ... [more]
FKBP1_DICDI1.483e-1746.79FK506-binding protein 1 OS=Dictyostelium discoideu... [more]
FKB1A_RABIT1.483e-1744.25Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Oryc... [more]
FKB1A_HUMAN1.483e-1744.25Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo... [more]
FKB1B_HUMAN1.936e-1745.13Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Homo... [more]
FKB1B_BOVIN1.936e-1745.13Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Bos ... [more]
FKB1B_RAT3.303e-1745.13Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Ratt... [more]
FKB1B_MOUSE3.303e-1745.13Peptidyl-prolyl cis-trans isomerase FKBP1B OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304941 ID=CB304941; Name=CB304941; organism=Citrus sinensis; type=EST; length=589bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAAGTTGCACATGTA
GTGTTATTAAAACGTCGAAAAAAAAATCGTTCCAACATATCCATCTGATA
TTTATCAGGAGTTCAGGATAACATACATACATGTCCATGGTAAGACAATT
TATTTAAAACCATAAAATTTCTAGATGGTTTTCTGCCTTTATGAGGTGCT
TATTCTACCTGCAGGACTTGTATCTCGAAATCCAGGACTGAGTTAGGTTG
AATCCCCCATTGTGGAAATCCACCAGCACCATAGGCGTAATCTGGGGAGC
ACCGCAGACGAGCAACTTCTCCCACCTGCATTCCCATCACGCCTTCATCC
CATCCTTTTATAACAGAGCCTTTGCCAATCTGGAATGTAAAAGGCTGCTG
CCCAGGGTCCTTTGGGCTCCAGAACTTCTGAGACAGATCGCCATTTTTCC
CGTAGCCAGTGCAGTGGACGGTAACCTTCTGACCAGCAACCGGCTTAGGA
CCGTTTCCTGGGGTCAAAATTTGCTTCTCTATTCCCATCTCCTTCTCTGT
CTTAGGGTTTTTGACTTTCTGGTAACTCTTTTTAATCCC
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