CB304947

Overview
NameCB304947
Unique NameCB304947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_VIBC3 (Phosphoadenosine phosphosulfate reductase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=cysH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11
Identity = 46/158 (29.11%), Postives = 79/158 (50.00%), Query Frame = -2
Query:   35 DTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPG 502
            DTG L PETY+F DE+ +   + ++             R   L+    +G +   ++ KV P+RRAL  L    W +G R++QS  +R+ +P++        ++ GV    K+ PV +    ++  +L+  D+P + L  QGY+S+G    T+   PG
Sbjct:   81 DTGYLFPETYQFIDELTERLNLNLKVYSAPVSAAWQEARYGKLWEQGVEGIERYNQINKVEPMRRALDELNIGTWFSGLRREQSQ-SRASLPILS-------VQNGV---FKFLPVIDWTNKEVHYYLKDNDLPYHPLWEQGYLSVGDTHTTQKWQPG 227          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_ERWT9 (Phosphoadenosine phosphosulfate reductase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=cysH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.202e-11
Identity = 46/162 (28.40%), Postives = 80/162 (49.38%), Query Frame = -2
Query:   35 VFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPG 514
            V   DTG L PETYRF D++ +   + ++    +        R   L+    +G +   ++ KV P+ RAL+ L  + W  G R+DQS G+R+ +PV+        ++ G+  L+   P+ +     ++ +L+   +  + L  QGY+S+G    TR   PG
Sbjct:   74 VILTDTGYLFPETYRFIDQLTEKLDLNLQVFRAEQSPAWQEARYGKLWEQGVEGIERYNQINKVEPMNRALETLQGQTWFAGLRRDQS-GSRAHLPVL-------AVKKGIFKLL---PIIDWDNRQVYQYLQQHGLSYHPLWEQGYLSVGDTHTTRKWEPG 224          
The following BLAST results are available for this feature:
BLAST of CB304947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CYSH_VIBC32.463e-1129.11Phosphoadenosine phosphosulfate reductase OS=Vibri... [more]
CYSH_ERWT94.202e-1128.40Phosphoadenosine phosphosulfate reductase OS=Erwin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304947 ID=CB304947; Name=CB304947; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGTCCTGGAAGGACAGGC
CTTGTGCATGGCTCACACCCAATTGAGATGTACCCTTGTGTGTGCAAGGA
ATTGATGGGCACATCCATAGTACGAAGGAAGTTCCAAATGTCATTCCCCT
TCACATTAGCCACTGGATTCCACTTCACCAGGCTGCCAACCCCACCTTCC
AGCCCCTCAAAAACTGGATCCTCCTGGACTACAGGGATTTCAGACCTAGT
ACCTGGAGACTGATCTTTCCTTTGGCCAGTGATCCAGGCACGCAATCCCT
TGAGGGCCCTCCGAAGGGGCCTCACTTTCCTCACACGGCAGCACTCCTGG
TGCCCATCCTCATAGAAAGAGAAGAGCCCCTTGCTCCTCACTAATGCCTG
AACTTCAACAGCATCGGGAAACATGTATTCAATACGTATGCCAAAATGTT
TCTCAACTTCGTCAAAGAATCTATATGTTTCTGGGTTTAGCCTTCCAGTA
TCCAGGCTAAACACCCTAAATGGTCTACCAGTTAAATGGGCATACTCGAT
CAAAGCAACATCT
back to top