CB304954

Overview
NameCB304954
Unique NameCB304954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.440e-37
Identity = 78/122 (63.93%), Postives = 92/122 (75.41%), Query Frame = -1
Query:  272 NAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 637
            NAP  A + + F NA++DW+ETP+AHVFKADLPGLR         +G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT           K+I+ISG
Sbjct:   38 NAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.799e-37
Identity = 77/120 (64.17%), Postives = 90/120 (75.00%), Query Frame = -1
Query:  272 PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 631
            P +  + + FA ARIDWKETP+ HVFKAD+PGL+         +G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   40 PRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 9.892e-37
Identity = 76/123 (61.79%), Postives = 94/123 (76.42%), Query Frame = -1
Query:  272 TNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 640
            TNAP  A++ + F NA++DW+ETP+AHVFKAD+PGL+         +G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT           K+++ISG
Sbjct:   36 TNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.292e-36
Identity = 74/115 (64.35%), Postives = 90/115 (78.26%), Query Frame = -1
Query:  272 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 616
            ET+ FANAR+DWKETP+AHVFK DLPG++         +G +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++AKVE+VKA +ENGVLTVT           KAIEISG
Sbjct:   37 ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.687e-36
Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  272 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 619
            +ET+ FAN  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+NA V++VKA MENGVLTVT           K+I ISG
Sbjct:   44 KETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.687e-36
Identity = 76/120 (63.33%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  272 PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 631
            P +  + + FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I+G
Sbjct:   35 PRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.204e-36
Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = -1
Query:  272 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 628
            +++ E+S FAN RIDWKETP+ HVFK DLPGL+         E R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   36 TNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.878e-36
Identity = 76/119 (63.87%), Postives = 89/119 (74.79%), Query Frame = -1
Query:  272 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 628
            S + E S F N R+DWKETP+AHVF+AD+PGL+         + R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEISG
Sbjct:   35 SLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.878e-36
Identity = 77/124 (62.10%), Postives = 95/124 (76.61%), Query Frame = -1
Query:  272 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 637
            ++PS++  RE   F + R+DWKETP+AHVFKADLPGL+         + R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT           K+IEISG
Sbjct:   35 SSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.759e-36
Identity = 77/121 (63.64%), Postives = 92/121 (76.03%), Query Frame = -1
Query:  272 PSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 631
            PSS + E S F + R+DWKETP+AHVFKAD+PGL+         +GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT           KAI+ISG
Sbjct:   33 PSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
The following BLAST results are available for this feature:
BLAST of CB304954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS17C_ARATH4.440e-3763.9317.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS177_ORYSJ5.799e-3764.1717.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP17_ARATH9.892e-3761.7917.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16A_WHEAT1.292e-3664.3516.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP12_DAUCA1.687e-3666.3818.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS174_ORYSJ1.687e-3663.3317.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLLC2.204e-3663.8717.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP13_SOYBN2.878e-3663.8717.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA2.878e-3662.1018.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOYBN3.759e-3663.6417.3 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_F09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_F09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304954 ID=CB304954; Name=CB304954; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTACAAAATATATTTTA
TTGCATCACACTTTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGAC
TGGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAA
CAGGGGGAAGGGAAGAAAACAAACACACACACACATACAAACACACAAGG
GCTTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACTATCTTGAA
AACATTTACAGTTATCACTTAGCCAGAGATCTCAATAGCCTTAACTTCAG
GTTTCTTCTCCTCCTGTTTAGGAACGGTGACTGTGAGCACACCATTCTCC
ATGCTGGCCTTAACCTGTTCCACCTTAGCATTGTCGGGCAACCTGAACCT
CCTCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCT
TCTCTTCCTGCTCCTTGCTCCTCTCTCCGCTTATCTGCAGAATCCTGCCC
TCTTCAACCACAACTTTTACTTCTTCTTTCCTCAGCCCTGGAAGATCAGC
TTTGAATACGTGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGG
CGAATTGGGATGTTTCCCTAGCCGAAGACGGCGCGTTGGT
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