CB304959

Overview
NameCB304959
Unique NameCB304959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: PROA_PSYWF (Gamma-glutamyl phosphate reductase OS=Psychrobacter sp. (strain PRwf-1) GN=proA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.773e-26
Identity = 53/99 (53.54%), Postives = 74/99 (74.75%), Query Frame = -1
Query:  292 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHV 588
            +  V+I+D + AAIDHI+ HGS HTD I+  +   ++ F+ +VDSA+V  NAS+RF DG  +GLGAE+GIST +IHARGPVG+ GL + +WI+ G+G V
Sbjct:  332 ILAVKIIDGLDAAIDHINTHGSHHTDVIITNNYSKSQRFIREVDSASVMINASSRFADGFEYGLGAEIGISTDKIHARGPVGLNGLTSQKWIVYGHGEV 430          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: PROA_LEIXX (Gamma-glutamyl phosphate reductase OS=Leifsonia xyli subsp. xyli GN=proA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.773e-26
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = -1
Query:  292 TVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHV 582
            +V +VDD+ AAI+HI  H + HT+ IV  D   AE FL +VDSA V  NASTRF DG  FG GAEVGIST ++HARGP+G+  L +T+WI+RG G V
Sbjct:  323 SVRVVDDLDAAIEHIRTHSTQHTEAIVTNDLANAERFLNEVDSAVVMVNASTRFTDGGEFGFGAEVGISTQKLHARGPMGLPELTSTKWIVRGAGQV 419          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: PROA_FRAP2 (Gamma-glutamyl phosphate reductase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=proA PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 8.773e-26
Identity = 52/100 (52.00%), Postives = 74/100 (74.00%), Query Frame = -1
Query:  292 MVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHV 591
            +V +++ V ++  AI+HI+ HGS H++CIV E     E FL +VD+AAV+ NASTRF DG+ FG G E+GIST ++HARGP+G+  L T ++I+RGNG V
Sbjct:  313 LVLSIKTVANINEAIEHINTHGSMHSECIVTESYTNTEIFLNEVDAAAVYANASTRFTDGSEFGFGGEIGISTQKLHARGPMGINELTTLKYIIRGNGQV 412          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: PROA_RHORT (Gamma-glutamyl phosphate reductase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=proA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = -1
Query:  298 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 588
            + ++ +V D+  A+ HI  H S HTDCI+ ED   AE FL +VDSA V HNAST+F DG  FG+GAE+GIST R+HARGPVGVE L   ++ +RG G
Sbjct:  327 IVSIRVVADLDEALAHIAAHSSDHTDCILTEDAAAAERFLTEVDSAIVMHNASTQFADGGEFGMGAEIGISTGRLHARGPVGVEQLTIFKYKVRGTG 423          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: PROA_PSEMY (Gamma-glutamyl phosphate reductase OS=Pseudomonas mendocina (strain ymp) GN=proA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 53/99 (53.54%), Postives = 74/99 (74.75%), Query Frame = -1
Query:  292 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHV 588
            +  + IVD + AAI+HI+ +GS HTD I+ E    A  FL +VDSA+V  NASTRF DG  +GLGAE+GIST ++HARGPVG+EGL + ++++ G+GH+
Sbjct:  321 ILAIRIVDSLDAAIEHINHYGSHHTDSIITEHFSDARRFLTEVDSASVMVNASTRFADGFEYGLGAEIGISTDKLHARGPVGLEGLTSEKYVVFGDGHI 419          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: PROA_LEGPL (Gamma-glutamyl phosphate reductase OS=Legionella pneumophila (strain Lens) GN=proA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 50/98 (51.02%), Postives = 73/98 (74.49%), Query Frame = -1
Query:  286 VEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD 579
            ++ V +++AAI HI Q  S H++ I+AED+   + FL +VD+AAV+ NAST F DG  FGLGAE+GIST ++HARGP+G+E L + +W++RG G + D
Sbjct:  320 IKTVPNIKAAIGHIQQFSSHHSEAIIAEDESAIDQFLIEVDAAAVYANASTAFTDGGEFGLGAEIGISTQKVHARGPMGLEALTSYKWVIRGTGQIRD 417          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: PROA_LEGPC (Gamma-glutamyl phosphate reductase OS=Legionella pneumophila (strain Corby) GN=proA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 48/96 (50.00%), Postives = 73/96 (76.04%), Query Frame = -1
Query:  292 VEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHV 579
            ++ V +++AAIDHI Q  S H++ ++AED+   + FL +VD+AAV+ NAST F DG  FGLGAE+GIST ++HARGP+G++ L + +W++RG G +
Sbjct:  320 IKTVPNIKAAIDHIQQFSSHHSEAVIAEDESAIDKFLTEVDAAAVYANASTSFTDGGEFGLGAEIGISTQKVHARGPMGLDALTSYKWVIRGTGQI 415          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: PROA_CHRVO (Gamma-glutamyl phosphate reductase OS=Chromobacterium violaceum GN=proA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = -1
Query:  292 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHV 588
            V  V++V D+  AI+HI++ GS HTD IV ED   +  FL +VDSA+V  NASTRF DG  +GLGAE+GIST +IHARGPVG+ GL + +WI+ G+G V
Sbjct:  319 VLAVKVVKDIDEAIEHINRWGSHHTDAIVTEDYGRSRRFLREVDSASVMVNASTRFADGFEYGLGAEIGISTDKIHARGPVGLNGLTSQKWIVLGDGQV 417          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: PROA_BURTA (Gamma-glutamyl phosphate reductase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=proA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = -1
Query:  298 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 588
            V  ++IVD + AAI+HI+++GS HTD IV ED   A  FL +VDSA+V  NASTRF DG  FGLGAE+GIS  ++HARGPVG+EGL + ++++ G+G
Sbjct:  323 VLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISNDKLHARGPVGLEGLTSLKYVVLGHG 419          
BLAST of CB304959 vs. ExPASy Swiss-Prot
Match: PROA_BURPS (Gamma-glutamyl phosphate reductase OS=Burkholderia pseudomallei GN=proA PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = -1
Query:  298 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 588
            V  ++IVD + AAI+HI+++GS HTD IV ED   A  FL +VDSA+V  NASTRF DG  FGLGAE+GIS  ++HARGPVG+EGL + ++++ G+G
Sbjct:  323 VLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISNDKLHARGPVGLEGLTSLKYVVLGHG 419          
The following BLAST results are available for this feature:
BLAST of CB304959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PROA_PSYWF8.773e-2653.54Gamma-glutamyl phosphate reductase OS=Psychrobacte... [more]
PROA_LEIXX8.773e-2657.73Gamma-glutamyl phosphate reductase OS=Leifsonia xy... [more]
PROA_FRAP28.773e-2652.00Gamma-glutamyl phosphate reductase OS=Francisella ... [more]
PROA_RHORT1.146e-2555.67Gamma-glutamyl phosphate reductase OS=Rhodospirill... [more]
PROA_PSEMY1.146e-2553.54Gamma-glutamyl phosphate reductase OS=Pseudomonas ... [more]
PROA_LEGPL1.146e-2551.02Gamma-glutamyl phosphate reductase OS=Legionella p... [more]
PROA_LEGPC1.146e-2550.00Gamma-glutamyl phosphate reductase OS=Legionella p... [more]
PROA_CHRVO1.146e-2556.57Gamma-glutamyl phosphate reductase OS=Chromobacter... [more]
PROA_BURTA1.146e-2556.70Gamma-glutamyl phosphate reductase OS=Burkholderia... [more]
PROA_BURPS1.146e-2556.70Gamma-glutamyl phosphate reductase OS=Burkholderia... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_G02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_G02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304959 ID=CB304959; Name=CB304959; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAATTCAAATTCTGAACTT
CATTATTGACTTGAGGAAACTTTCTATTACATGAGGCTCTACCCCAAGCA
AGATCCAAGTAATAAAACTAAAGATCTTAATAAATAACATCAGCAAAGTG
CAATAAATATACACCAAGTAAATAGAGTCTCAGAAGCAGCTACCATAATA
TTATACAAATGACATGGTTTAGAACCATAAGTTACTAGGATTGCAAGGCA
AGATTCTTGTGGGTATAGACGACTCCTTGATCACCATCTACGACGTGTCC
ATTCCCTCTCAATATCCATCGAGTAGTTAGCAATCCTTCAACTCCGACTG
GACCACGAGCATGAATCCTGCTTGTGCTTATTCCAACCTCTGCACCAAGT
CCAAATCGTGCTCCATCACAGAATCGTGTACTTGCATTATGAAATACTGC
AGCACTGTCAACTTGACATAAAAATGTTTCAGCAACTTTTTGATCTTCTG
CAACAATGCAATCAGTATGGGCACTTCCATGTTGATGAATATGGTCAATA
GCAGCACGCACATCGTCCACAATTTCAACCGTACAAACCAT
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