CB304972

Overview
NameCB304972
Unique NameCB304972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12449 contig Csv1_Contig12449:963..1506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KN1_SOLLC (Homeotic protein knotted-1 OS=Solanum lycopersicum GN=KN1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.140e-13
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L TWW+ H KWPYP+E +K  L E TGL  KQI NWFINQRKR+W
Sbjct:  273 LITWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 317          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: HLG3_MAIZE (Homeobox protein liguleless 3 (Fragment) OS=Zea mays GN=LG3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = -2
Query:  406 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 543
            VL  WW  H +WPYPTE+DK +L   TGL  KQI NWFINQRKR+W
Sbjct:   37 VLLEWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHW 82          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNX11_MAIZE (Homeobox protein knotted-1-like 11 (Fragment) OS=Zea mays GN=KNOX11 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW  H +WPYPTE+DK +L   TGL  KQI NWFINQRKR+W
Sbjct:   41 LMDWWNTHYRWPYPTEEDKVRLAAATGLDPKQINNWFINQRKRHW 85          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNX10_MAIZE (Homeobox protein knotted-1-like 10 (Fragment) OS=Zea mays GN=KNOX10 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = -2
Query:  406 WWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 531
            WWQ H +WPYP+E +KA L E TGL+ KQI NWFINQRKR+W
Sbjct:   44 WWQLHYRWPYPSELEKAALAESTGLEAKQINNWFINQRKRHW 85          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNAP2_MALDO (Homeobox protein knotted-1-like 2 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L +WW+ H KWPYP+E +K  L E TGL  KQI NWFINQRKR+W
Sbjct:  316 LLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 360          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNAP1_MALDO (Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L +WW+ H KWPYP+E +K  L E TGL  KQI NWFINQRKR+W
Sbjct:  317 LLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHW 361          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOX5_MAIZE (Homeobox protein knotted-1-like 5 (Fragment) OS=Zea mays GN=KNOX5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW  H +WPYPTE+DK +L   TGL  KQI NWFINQRKR+W
Sbjct:   38 LMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHW 82          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOSA_ORYSJ (Homeobox protein knotted-1-like 10 OS=Oryza sativa subsp. japonica GN=OSH71 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW  H +WPYPTE+DK +L   TGL  KQI NWFINQRKR+W
Sbjct:  234 LMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHW 278          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOSA_ORYSI (Homeobox protein knotted-1-like 10 OS=Oryza sativa subsp. indica GN=OSH71 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW  H +WPYPTE+DK +L   TGL  KQI NWFINQRKR+W
Sbjct:  234 LMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHW 278          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOS1_ORYSJ (Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica GN=OSH6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = -2
Query:  406 LKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNW 540
            L  WW  H +WPYPTE+DK +L   TGL  KQI NWFINQRKR+W
Sbjct:  225 LLEWWNTHYRWPYPTEEDKLRLAARTGLDPKQINNWFINQRKRHW 269          
The following BLAST results are available for this feature:
BLAST of CB304972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
KN1_SOLLC4.140e-1366.67Homeotic protein knotted-1 OS=Solanum lycopersicum... [more]
HLG3_MAIZE5.406e-1365.22Homeobox protein liguleless 3 (Fragment) OS=Zea ma... [more]
KNX11_MAIZE9.222e-1364.44Homeobox protein knotted-1-like 11 (Fragment) OS=Z... [more]
KNX10_MAIZE9.222e-1369.05Homeobox protein knotted-1-like 10 (Fragment) OS=Z... [more]
KNAP2_MALDO9.222e-1364.44Homeobox protein knotted-1-like 2 OS=Malus domesti... [more]
KNAP1_MALDO9.222e-1364.44Homeobox protein knotted-1-like 1 OS=Malus domesti... [more]
KNOX5_MAIZE1.204e-1264.44Homeobox protein knotted-1-like 5 (Fragment) OS=Ze... [more]
KNOSA_ORYSJ1.204e-1264.44Homeobox protein knotted-1-like 10 OS=Oryza sativa... [more]
KNOSA_ORYSI1.204e-1264.44Homeobox protein knotted-1-like 10 OS=Oryza sativa... [more]
KNOS1_ORYSJ1.204e-1264.44Homeobox protein knotted-1-like 1 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304972 ID=CB304972; Name=CB304972; organism=Citrus sinensis; type=EST; length=544bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAATTAGAACGAAGCAACT
TAAAAACCTCGAGTTTCTTCAACCTGGTATAAGCTAGAAATTACGTGGAA
ACGTAATGAATCTACAAACTTATAAGAAAGCTATGTAAATCCCATCTCAT
CTATTACATTCTATGGAAGCTACCAAGGCTTTCCAAGTTTCTTCAGAGCC
TTCACAAAAGTTAGCACCAAAACGATATGTACCCCAGAGCCACAAAAGCA
AGCTAGCTAGATAGAGCTATATGTGTGTTGACACAAAAGTGAGTAACTCC
TTCATTGCTCATACATCATTAATTCATCGTCAAGATATATTTGGAGATAT
CTCTCTACCTTTTGCGCTTTGACTTTAAAGACGTCACNNNCTGGGAGTTG
CTGTGCCAGTTGCGCTTCCTCTGGTTGATGAACCAGTTGATGATTTGCTT
TAGTTGCAAGCCTGTCTCCTCCACTAGCTTTGCCTTGTCATCTTCAGTTG
GGTATGGCCATTTGGAGTGTTGCTGCCACCAAGTCTTGAGCACT
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