CB304986

Overview
NameCB304986
Unique NameCB304986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = -3 
Query:  274 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 621
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   + + DIDK+KYLVP+D++V QF++++RKRI+L +EKAIF+FV  T+P +   M  +YE+ KDEDGFLY+ YSGENTFG+
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117
[Close]
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = -3 
Query:  274 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 621
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   + + DIDK+KYLVP+D++V QF++++RKRI+L +EKAIF+FV  T+P +   M  +YE+ KDEDGFLY+ YSGENTFG+
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117
[Close]
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.153e-36
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = -3 
Query:  274 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGW 621
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   + + DIDK+KYLVP+D++V QF++++RKRI+L +EKAIF+FV  T+P +   M  +YE+ KDEDGFLY+ YSGENTFG+
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117
[Close]
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.340e-35
Identity = 67/115 (58.26%), Postives = 88/115 (76.52%), Query Frame = -3 
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N++ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVYG 116
[Close]
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -3 
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
[Close]
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -3 
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
[Close]
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -3 
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
[Close]
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -3 
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
[Close]
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -3 
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
[Close]
BLAST of CB304986 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = -3 
Query:  277 KSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 621
            K  +K +HP E R  E  +IR+KYPDR+PVIVEKA K  VPD+DK+KYLVP+DL+VGQF +++RKRI L  E A+F FV NT+PPT A M  +YE+N +ED FLY+ YS E+ +G
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
The following BLAST results are available for this feature:
BLAST of CB304986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL2_MOUSE5.153e-3659.48Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN5.153e-3659.48Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN5.153e-3659.48Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_PONAB3.340e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENTR7.440e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENLA7.440e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT7.440e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE7.440e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN7.440e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO7.440e-3558.26Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304986 ID=CB304986; Name=CB304986; organism=Citrus sinensis; type=EST; length=656bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTAAATTAGTTTCCTCC
ATTCAATATCTACCGCTAAGGGACAATTTTAACGAGAGTTACTTCTATCA
TCAACTGATGCAATCAACCCAAAATAAAAACAATCATCAACTGATGCAAT
CAACCCCAAATAAAAACAAGATATCAGTGAACATGTCTGGGAATGGCTTA
AAAGGGATCAACTGAGAATATACAACTTTCAAATTTTATGATACATGGCT
TGTTGCCTTCGCTCTTAAAATGACCAACCGAAGGTATTCTCTCCACTGTA
AGTCATGTAAAGAAAACCATCTTCATCCTTGTTTTCCTCATATATAGCAG
ACATCAAGGCACCGGTTGGAGGTAAAGTATTCTTAACAAAAACAAATATG
GCCTTTTCTGCACTGAGCTTAATCCTTTTACGGACAACATAAACAAATTG
TCCCACAGATAAATCCGCTGGGACAAGGTATTTTTTCTTGTCAATGTCAG
GAACATCAGTCTTCTCAGCCTTCTCCACAATCACCGGAATCCTGTCAGGA
TACTTCTCTCTAATGCGAGCAGATTCTGCCAGCCTCCTCTCCAATGGATG
CTCGAGCTTGAATGAACTTTTGGCCATGGCGAAACTGACGCTACGATGAC
TCTTCA
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