CB304987

Overview
NameCB304987
Unique NameCB304987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.357e-14
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = -2
Query:  302 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCN 517
            R ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    3 RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.357e-14
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = -2
Query:  302 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCN 517
            R ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    3 RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.357e-14
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = -2
Query:  302 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCN 517
            R ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    3 RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.357e-14
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = -2
Query:  302 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCN 517
            R ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    3 RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.357e-14
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = -2
Query:  302 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCN 517
            R ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    3 RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 39/87 (44.83%), Postives = 62/87 (71.26%), Query Frame = -2
Query:  257 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALE 517
            R ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L +Y +  Y  P  + +  + LE
Sbjct:    3 RKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13
Identity = 38/87 (43.68%), Postives = 62/87 (71.26%), Query Frame = -2
Query:  257 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALE 517
            R ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L +Y +  Y  P  + +  + L+
Sbjct:    3 RKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTE--YSEPHESRTNADILQ 86          
The following BLAST results are available for this feature:
BLAST of CB304987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2C_BOVIN4.357e-1452.78Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA4.357e-1452.78Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB4.357e-1452.78Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE4.357e-1452.78Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK4.357e-1452.78Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2B_HUMAN1.656e-1344.83Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE6.291e-1343.68Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304987 ID=CB304987; Name=CB304987; organism=Citrus sinensis; type=EST; length=518bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCGCTCAGCAACTGTTCC
TTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTGAGTTCTTGTTGA
TCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAAGTGACTCAAGCT
CTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAAGGAGATTCCTTTGGGAT
CTCTGTAGGGCTTCATATCGTGCTTTAAGCTTCAAATATTCTTGCTGGCT
ACTTAGCTCCAGGGCCTCCCTTGCGGACACATTCGGTTCTGGTGCTCCAT
AGTTGCACTTCCGGTACCTCTCAAGCGTTTTGACCATGCTTGAACTACTG
CAAAACTCGTACAGCTTTCCTCTATTGGAGAAAATGATGAGAGCAACCTC
AGCATCACAAAGAACGGAAAGCTCATAAGCTTTCTTCAAAAGGCCATTTC
TTCTCTTTGCAAAGGTCACTTGCCTGTTGATCTTGTTCTCTATCCTCTTC
AACTCAACCCTACCCCTT
back to top