CB304987

Overview
NameCB304987
Unique NameCB304987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.799e-26
Identity = 65/161 (40.37%), Postives = 99/161 (61.49%), Query Frame = -2
Query:   38 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGP-LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLL 517
            RG+V+L+RIEN ++RQVTF KRR GLLKKA ELS+LC+A++ +IIFS  GKLY+  ++ +M + +ERY+     A     +A     +  +QE + LK     LQ+  R + G      +  +EL +LER L++ +  IRS + Q M+  +  L+ KE +L
Sbjct:    3 RGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYK----SASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGML 159          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 3.799e-26
Identity = 65/161 (40.37%), Postives = 99/161 (61.49%), Query Frame = -2
Query:   38 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGP-LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLL 517
            RG+V+L+RIEN ++RQVTF KRR GLLKKA ELS+LC+A++ +IIFS  GKLY+  ++ +M + +ERY+     A     +A     +  +QE + LK     LQ+  R + G      +  +EL +LER L++ +  IRS + Q M+  +  L+ KE +L
Sbjct:    3 RGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYK----SASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGML 159          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.962e-26
Identity = 66/163 (40.49%), Postives = 103/163 (63.19%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            R ++++++I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+EFC SSSM + LER+   +    + +  + E L+L    ++ ++           R + GEEL  L+ +EL+ LE+ L+  L ++  T++  ++  ++ELQ K   L +E
Sbjct:    3 REKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFC-SSSMKEVLERHNLQSKNLEKLDQPSLE-LQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDE 163          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.105e-25
Identity = 64/168 (38.10%), Postives = 102/168 (60.71%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMVKTLERYRKCNYGAPEPNVSAREALELSSQQ----EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            RG++E+KRIEN  NRQVTF+KRR GLLKKA EL+VLCDA V ++IFS+ GK++E+CS + S+ + +E Y+          V+     E++  Q    E  +++   E L    R   G++L  L   ++  LE+QL+ S+ ++R+ + Q +   L  L+ KE +L ++
Sbjct:    3 RGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQ---------TVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQ 161          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.444e-25
Identity = 70/163 (42.94%), Postives = 101/163 (61.96%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            RG++E+KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF++ GK++EF SS+S+V  L++Y K             +A   +   E  K+K   + +Q   R+L GE++  LN +EL  LE  LD  L  IR+ +     D L  ++ K Q + EE
Sbjct:    3 RGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHKLT------GRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQN----DLLRMMRKKTQSMEEE 154          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.200e-25
Identity = 69/166 (41.57%), Postives = 104/166 (62.65%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELSSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            RG++E+KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF++ GK++EF SS+S+V  L++Y K         ++ R  L+   +    E  K+K   + +Q   R+L GE++  LN +EL  LE  L+  L  IR+ +     + L  ++ K Q + EE
Sbjct:    3 RGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHK---------LTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQN----EVLRMMRKKTQSMEEE 154          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.165e-25
Identity = 67/168 (39.88%), Postives = 104/168 (61.90%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMVKTLERYRKCN----YGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            RG++E+KRIEN  NRQVT++KRRNG++KKA E++VLCDA+V+LIIF N GK++E+CS S+++   L+ Y+K +    + A   N+S           E  ++K   + +Q   R+L GE++  LN KEL  LE  L   L  I + ++    + L  ++  +Q+L EE
Sbjct:    3 RGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLS----------NEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQS----EILRMVRKNDQILEEE 156          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.165e-25
Identity = 69/164 (42.07%), Postives = 101/164 (61.59%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYRKCNYGAPEPNVSAREALELS-SQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            R R E+KRIE+   RQVTF+KRR GL KKA ELSVLCDA+VALI+FS+ GKL  F +SSSM + +++Y   N  +     + + +L+L+    +Y  L  +        R + GEEL  L+  EL+ LE+ L+  L ++  T+ Q  ++ ++ELQ K   L+EE
Sbjct:    3 RERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHF-ASSSMNEIIDKY---NTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEE 162          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.165e-25
Identity = 69/166 (41.57%), Postives = 99/166 (59.64%), Query Frame = -2
Query:   29 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLER---YRKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEE 517
            R ++++K+I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+++ SSSSM + LER   + K      +P++     L+L     Y +L           R + GEEL  LN +EL+ LER L+  L ++   +   ++  + +LQ K   L EE
Sbjct:    3 REKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDY-SSSSMKQILERRDLHSKNLEKLDQPSLE----LQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEE 163          
BLAST of CB304987 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.556e-24
Identity = 68/167 (40.72%), Postives = 99/167 (59.28%), Query Frame = -2
Query:   59 RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMVKTLERYR----KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQI---------RSTRTQYMLDTLTEL 517
            RG++E+KRIEN  NRQVTF+KRR+G+LKKA E+SVLCDAEV ++IFS+ GKLY++CS  +S+ + LE+Y+    K  +     ++SA          E  ++K   + +Q   R+L GE+L  L  KEL  +E  LD  +  +         R  RT  ML+   +L
Sbjct:    3 RGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSA----------EIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDKLMDHWERHVRTDKMLEDENKL 159          
The following BLAST results are available for this feature:
BLAST of CB304987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD26_ORYSJ3.799e-2640.37MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI3.799e-2640.37MADS-box transcription factor 26 OS=Oryza sativa s... [more]
SVP_ARATH4.962e-2640.49MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MAD29_ORYSJ1.105e-2538.10MADS-box transcription factor 29 OS=Oryza sativa s... [more]
GLOB_TOBAC1.444e-2542.94Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
FBP1_PETHY4.200e-2541.57Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
MADS2_PETHY7.165e-2539.88Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
MAD22_ORYSJ7.165e-2542.07MADS-box transcription factor 22 OS=Oryza sativa s... [more]
JOIN_SOLLC7.165e-2541.57MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
MADS2_ORYSJ3.556e-2440.72MADS-box transcription factor 2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304987 ID=CB304987; Name=CB304987; organism=Citrus sinensis; type=EST; length=518bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCGCTCAGCAACTGTTCC
TTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTGAGTTCTTGTTGA
TCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAAGTGACTCAAGCT
CTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAAGGAGATTCCTTTGGGAT
CTCTGTAGGGCTTCATATCGTGCTTTAAGCTTCAAATATTCTTGCTGGCT
ACTTAGCTCCAGGGCCTCCCTTGCGGACACATTCGGTTCTGGTGCTCCAT
AGTTGCACTTCCGGTACCTCTCAAGCGTTTTGACCATGCTTGAACTACTG
CAAAACTCGTACAGCTTTCCTCTATTGGAGAAAATGATGAGAGCAACCTC
AGCATCACAAAGAACGGAAAGCTCATAAGCTTTCTTCAAAAGGCCATTTC
TTCTCTTTGCAAAGGTCACTTGCCTGTTGATCTTGTTCTCTATCCTCTTC
AACTCAACCCTACCCCTT
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