CB304990

Overview
NameCB304990
Unique NameCB304990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: CP2U1_MOUSE (Cytochrome P450 2U1 OS=Mus musculus GN=Cyp2u1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.334e-14
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = -2
Query:  263 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTV 565
            + GFT+PKG  V +N+W++ RD + W+ P  F P RFL       K + F  IPFG G+R+C G  LA   L LM  SL+ +F + L   +    M  +FGLT+
Sbjct:  417 LQGFTIPKGTVVLINLWSVHRDPAIWEKPDDFCPHRFLDDQGQLLKRETF--IPFGIGKRVCMGEQLAKMELFLMFVSLMQTFTFALPEGSEKPVMTGRFGLTL 518          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.967e-14
Identity = 36/111 (32.43%), Postives = 57/111 (51.35%), Query Frame = -2
Query:  317 AVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 643
            AV+KE                  D ++ G+ +P  +++ VN W +  +   W  P  F PERFL   S  +  G +F  +PFG GRR CPG+ LA+ +L + +G L+ +F+
Sbjct:  359 AVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPDQWKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFE 469          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.967e-14
Identity = 37/111 (33.33%), Postives = 58/111 (52.25%), Query Frame = -2
Query:  317 AVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 643
            AVVKE                  D ++ G+ +P  +++ VN W +  + + W  P  F PERF    S+ +  G +F  +PFG GRR CPG+ LA+ +L + LG L+ +F+
Sbjct:  359 AVVKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFFEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFE 469          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.967e-14
Identity = 36/111 (32.43%), Postives = 57/111 (51.35%), Query Frame = -2
Query:  317 AVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 643
            AV+KE                  D ++ G+ +P  +++ VN W +  +   W  P  F PERFL   S  +  G +F  +PFG GRR CPG+ LA+ +L + +G L+ +F+
Sbjct:  359 AVIKETLRLRMAIPLFLPHMNLHDAKLGGYDIPAESKILVNAWFLANNPEHWKKPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFE 469          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: CP2U1_BOVIN (Cytochrome P450 2U1 OS=Bos taurus GN=CYP2U1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.967e-14
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = -2
Query:  263 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMD-MEDKFGLTV 565
            + GFT+PKG  +  N+W++ RD + W+ P+ F P+RFL       K + F  IPFG G+R+C G  LA   L LM  SL+ SF + L   +   +  K+GLT+
Sbjct:  431 LQGFTIPKGTIILPNLWSVHRDPAIWEKPNDFYPDRFLDDQGQLIKKETF--IPFGIGKRVCMGEQLAKMELFLMFVSLMQSFTFVLPKDSKPILTGKYGLTL 531          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: CP2U1_HUMAN (Cytochrome P450 2U1 OS=Homo sapiens GN=CYP2U1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.552e-13
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = -2
Query:  263 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL--DNHNMDMEDKFGLTV 565
            + G+T+PKG  +  N+W++ RD + W+ P  F P RFL       K + F  IPFG G+R+C G  LA   L LM  SL+ SF + L  D+    +  +FGLT+
Sbjct:  431 LQGYTIPKGTLILPNLWSVHRDPAIWEKPEDFYPNRFLDDQGQLIKKETF--IPFGIGKRVCMGEQLAKMELFLMFVSLMQSFAFALPEDSKKPLLTGRFGLTL 532          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: CP17A_RANDY (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rana dybowskii GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.552e-13
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = -2
Query:  260 IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD-FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHN--MDMEDKFGLTVQ 565
            I  +T+PK A+V +N+W++  DE  W NPH F P+RFL  N +     +   +PFGAG R+C G  LA   + L L  ++  F  ++   +   D+E KFG+ +Q
Sbjct:  394 IGEYTIPKEARVVINLWSLHHDEKEWVNPHLFSPDRFLDENGNRVYSPSPSFLPFGAGIRVCLGEALAKMEVFLFLSWILQRFTLEVPEGDPLPDLEGKFGVVIQ 498          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C79A2_ARATH (Phenylalanine N-hydroxylase OS=Arabidopsis thaliana GN=CYP79A2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.552e-13
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = -2
Query:  314 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSN--ADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW 574
            D  + G+ +PKG+ V ++   IGR+ S WD PH F PER L +N   D    +  +I F AGRR C G+ +   M +++L  LI  F W
Sbjct:  402 DTVVDGYFIPKGSHVLISRMGIGRNPSVWDKPHKFDPERHLSTNTCVDLNESDLNIISFSAGRRGCMGVDIGSAMTYMLLARLIQGFTW 490          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: C513F_DICDI (Probable cytochrome P450 513F1 OS=Dictyostelium discoideum GN=cyp513f1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.552e-13
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = -2
Query:  254 AVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDMED--KFGLTVQKA 643
            AV+KE                  DVEI GF + KG Q+  N+++  R E  WD P +FIPERF+  NA+ K +N  ++ FG G R C G   A  M+ L +  LI ++ +   + N  +++  ++GL +  A
Sbjct:  364 AVIKETHRLYSIAPLSEPHYCSNDVEIKGFKIAKGTQIIQNIYSSSRSEQYWDKPLSFIPERFI-DNANIKEKNKNIVSFGLGLRGCIGKSFAEYMIFLTVVRLIKNYKFSNPSPNQPLKEIGEYGLVMNCA 494          
BLAST of CB304990 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.027e-13
Identity = 36/111 (32.43%), Postives = 57/111 (51.35%), Query Frame = -2
Query:  317 AVVKEXXXXXXXXXXXXXXXXXKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNA--DFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 643
            AVVKE                  D ++ G+ +P  +++ VN W +  + + W  P  F PERF    +  +  G +F  +PFG GRR CPG+ LA+ +L + LG L+ +F+
Sbjct:  360 AVVKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFFEEESLVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFE 470          
The following BLAST results are available for this feature:
BLAST of CB304990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
CP2U1_MOUSE5.334e-1440.38Cytochrome P450 2U1 OS=Mus musculus GN=Cyp2u1 PE=2... [more]
TCMO_ZINEL6.967e-1432.43Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_PHAAU6.967e-1433.33Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
TCMO_CATRO6.967e-1432.43Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
CP2U1_BOVIN6.967e-1439.81Cytochrome P450 2U1 OS=Bos taurus GN=CYP2U1 PE=2 S... [more]
CP2U1_HUMAN1.552e-1339.42Cytochrome P450 2U1 OS=Homo sapiens GN=CYP2U1 PE=1... [more]
CP17A_RANDY1.552e-1337.14Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rana d... [more]
C79A2_ARATH1.552e-1339.33Phenylalanine N-hydroxylase OS=Arabidopsis thalian... [more]
C513F_DICDI1.552e-1333.33Probable cytochrome P450 513F1 OS=Dictyostelium di... [more]
TCMO_SOYBN2.027e-1332.43Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_C08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_C08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304990 ID=CB304990; Name=CB304990; organism=Citrus sinensis; type=EST; length=644bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATGCTATTAAATCGCATGA
CTTTATAGTTTATTGAAGATTAACTCCGTTAAGTTGCGTGTCTACATAAA
AAAAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTA
ACCACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGG
CTACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGG
TTGAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGT
GGTTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGA
TGTAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGC
TCCGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACC
CTAAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCA
TCTCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCAC
TGTGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATA
AGGGAGCTGCAGGGTGCAATCTCAAAGTTTCTTTAACAACAGCT
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