CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_KUNPU (Maturase K OS=Kunzea pulchella GN=matK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 87/129 (67.44%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK YLV LWQ HF    QPGR+ +N L   KY+++FLGY S VRLNS +VRSQMLEN FLI+N+MKK +T VPII LIGSL K+ FCN  GHPISK T +  SDS +IDRF+RICRNLSHY+SGS
Sbjct:  291 LMNKWKCYLVNLWQYHFSVWFQPGRIDINRLC--KYSLDFLGYRSSVRLNSSVVRSQMLENLFLINNAMKKFETIVPIIPLIGSLYKSNFCNTFGHPISKPTRTHSSDSDIIDRFLRICRNLSHYHSGS 417          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_FRAVE (Maturase K OS=Fragaria vesca GN=matK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 83/129 (64.34%), Postives = 102/129 (79.07%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ HF   SQPGR+ LN L   K++ +FLGYLS +R N  +VRSQ+LEN++L+ N+MKK++T  PII +IGSL K +FCN LGHPISKS+W+D SDS +IDRFVRI  N+SHYYSGS
Sbjct:  288 LMNKWKYYLVNFWQCHFYVWSQPGRIHLNQL--SKHSFDFLGYLSSIRPNISVVRSQLLENTYLMYNAMKKLNTLFPIIPMIGSLAKVKFCNTLGHPISKSSWADSSDSDIIDRFVRIVGNISHYYSGS 414          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CUBDO (Maturase K OS=Cubanola domingensis GN=matK PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  WQ +F      GRV +N L    + +NF+GYLS VRLN  +VRSQMLENSFLI+N++KK+DT VPII LIGSL KA+FCN LGHPISK  W+  SDS +IDRF +ICRNLSHY+SGS
Sbjct:  293 LMNKWKYYLVNFWQCYFDLWVHSGRVYINQL--PNHTLNFIGYLSSVRLNPSMVRSQMLENSFLINNAIKKLDTLVPIIPLIGSLAKAKFCNLLGHPISKPAWAGLSDSDIIDRFGQICRNLSHYHSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_SAXIN (Maturase K OS=Saxifraga integrifolia GN=matK PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.533e-43
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+NKWKYYLV  WQ +F   SQPGR+ +N L   K ++NFLGYLS VRLN   VRSQMLENSF++DN++KK D  VPII LI SL KA+FCN +G PISK  W+D SDS++IDRFVRICRN+ HY+SGS
Sbjct:  296 LLNKWKYYLVNFWQCNFYLWSQPGRIHINQL--SKNSLNFLGYLSSVRLNPSAVRSQMLENSFIMDNAIKKFDIIVPIIPLIRSLAKAKFCNLVGDPISKPAWADSSDSYIIDRFVRICRNIYHYHSGS 422          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_NICOT (Maturase K OS=Nicotiana otophora GN=matK PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.533e-43
Identity = 85/129 (65.89%), Postives = 97/129 (75.19%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK+YLV  WQ HF      GR+ +N L     + +F+GYLS VRLN  +VRSQMLENSFLI+N++KK DT VPII LIGSL KA FC  LGHPISK  WSD SDS++IDRF RICRNL HYYSGS
Sbjct:  297 LMNKWKFYLVNFWQCHFSLCFHTGRIHINQL--SNDSRDFMGYLSSVRLNPSMVRSQMLENSFLINNAIKKFDTLVPIIPLIGSLAKANFCTVLGHPISKPVWSDLSDSYIIDRFGRICRNLFHYYSGS 423          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_FROFL (Maturase K OS=Froelichia floridana GN=matK PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.533e-43
Identity = 81/129 (62.79%), Postives = 99/129 (76.74%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWKYY +  WQ +F   SQP R+ +N L    Y+++F+G+LS VR NS ++RSQMLENSFL++N  KK DT VPI  L+GSL KA+FCN LGHPI KS W+D SDS +IDRF RICRNLSHYYSGS
Sbjct:  293 LMHKWKYYFIYFWQCYFSVWSQPRRIYINQL--SNYSLDFMGFLSNVRFNSSVIRSQMLENSFLLENIRKKFDTIVPISPLVGSLAKAKFCNVLGHPIGKSVWTDLSDSDIIDRFGRICRNLSHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CHOSU (Maturase K OS=Choricarpia subargentea GN=matK PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 2.533e-43
Identity = 87/129 (67.44%), Postives = 102/129 (79.07%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF A  QPGR+ +N L    Y+++FLGY S VRLNS +V  QML+N FLI+N+MK  +T VPII LIGSL+KA FCN LGHPISK T SD SDS +I+RF+RICRNLSHY+SGS
Sbjct:  291 LMNKWKYYLVNLWQYHFYAWFQPGRININQLCX--YSLDFLGYRSSVRLNSSVVXXQMLKNLFLINNAMKXFETIVPIIPLIGSLSKANFCNTLGHPISKPTRSDSSDSDIINRFLRICRNLSHYHSGS 417          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CERSL (Maturase K OS=Ceratonia siliqua GN=matK PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.533e-43
Identity = 82/128 (64.06%), Postives = 100/128 (78.12%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWKYYL+ LWQ +F   SQPG++ +N L   +++  FLGY S VRLN  +VRSQMLENSF+I+N MKK+DT +PII LI SL K +FCN LGHPISK  W+D SD  +IDRF+RICRNLSHYY+GS
Sbjct:  293 MNKWKYYLIHLWQCNFYVWSQPGKIHINQL--SEHSFYFLGYFSNVRLNPSVVRSQMLENSFIIENVMKKLDTIIPIIPLIRSLAKVKFCNGLGHPISKPVWADSSDFDIIDRFLRICRNLSHYYNGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_AUCJA (Maturase K OS=Aucuba japonica GN=matK PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.533e-43
Identity = 84/129 (65.12%), Postives = 99/129 (76.74%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYL+  WQ HF   S PGR+ +N L    ++ +F+GY S VRLN  +VRSQMLENSFLIDN++KK DT VPII LIGSL KA+FCN LG+PISK   +D SDS +IDRF RICRN SHY+SGS
Sbjct:  292 LMNKWKYYLINFWQCHFYLWSHPGRIYINQL--SNHSFDFMGYFSSVRLNPSMVRSQMLENSFLIDNAIKKFDTIVPIIPLIGSLAKAKFCNVLGYPISKPVRADLSDSDIIDRFGRICRNFSHYHSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_PARAU (Maturase K OS=Parkinsonia aculeata GN=matK PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.308e-43
Identity = 82/129 (63.57%), Postives = 100/129 (77.52%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKYYL+ LWQ HF   SQPG++ +N L   +++  FLGY S VRLN  +VRSQMLENSF+I+N MKK+DT +PII +I SL KARFCN LGHPISK  W+D SD  +IDRF+ IC+NLSHYY+GS
Sbjct:  292 LMKKWKYYLIHLWQCHFFVWSQPGKIHINQL--SEHSFYFLGYFSNVRLNPSVVRSQMLENSFIIENVMKKLDTIIPIIPIIRSLAKARFCNVLGHPISKPVWADSSDFDIIDRFLLICKNLSHYYNGS 418          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_KUNPU1.939e-4367.44Maturase K OS=Kunzea pulchella GN=matK PE=3 SV=1[more]
MATK_FRAVE1.939e-4364.34Maturase K OS=Fragaria vesca GN=matK PE=3 SV=1[more]
MATK_CUBDO1.939e-4365.89Maturase K OS=Cubanola domingensis GN=matK PE=3 SV... [more]
MATK_SAXIN2.533e-4365.12Maturase K OS=Saxifraga integrifolia GN=matK PE=3 ... [more]
MATK_NICOT2.533e-4365.89Maturase K OS=Nicotiana otophora GN=matK PE=3 SV=1[more]
MATK_FROFL2.533e-4362.79Maturase K OS=Froelichia floridana GN=matK PE=3 SV... [more]
MATK_CHOSU2.533e-4367.44Maturase K OS=Choricarpia subargentea GN=matK PE=3... [more]
MATK_CERSL2.533e-4364.06Maturase K OS=Ceratonia siliqua GN=matK PE=3 SV=1[more]
MATK_AUCJA2.533e-4365.12Maturase K OS=Aucuba japonica GN=matK PE=3 SV=1[more]
MATK_PARAU3.308e-4363.57Maturase K OS=Parkinsonia aculeata GN=matK PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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