CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_TRISO (Maturase K OS=Trifolium spumosum GN=matK PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 76/129 (58.91%), Postives = 94/129 (72.87%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK+Y + LWQ  F   SQP  + +N L   +++   LGY S VRLN  +VRSQML+N+FLI+   KK+D  VPII LI SL KA+FCN LGHPISK  W+D SD  +I+RF+RICRNLSHYY+GS
Sbjct:  293 LMNKWKHYFIYLWQCFFDVWSQPRTININQL--SEHSFQLLGYFSNVRLNRSVVRSQMLQNTFLIEIVSKKLDIIVPIIPLIRSLAKAKFCNVLGHPISKPVWADSSDFDIIERFLRICRNLSHYYNGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_MEDTR (Maturase K OS=Medicago truncatula GN=matK PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 76/129 (58.91%), Postives = 94/129 (72.87%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK+Y + LWQG F   SQP  + +N L   +++   LGY   VR+N  +VRSQML+N+FLI+   KK+D  VPII LI SL KA+FCN LGHPISK  W+D SD  +IDRF+RICRNLSHYY+GS
Sbjct:  293 LMNKWKHYFIHLWQGFFYVWSQPRTMNINQL--SEHSFQLLGYFLNVRVNRSVVRSQMLQNTFLIEIFNKKLDLIVPIIPLIRSLAKAKFCNVLGHPISKPVWADSSDFDIIDRFLRICRNLSHYYNGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_LILLO (Maturase K OS=Lilium longiflorum GN=matK PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KW+YY V  WQ +F   SQP R+ +N L    Y+  F+GYL  V +N   V++QMLENSFLID  +KK DT +PII LIGSL+KA+FC   GHPISK  W+D SD  +IDRF RICRNLSHYYSGS
Sbjct:  300 LMKKWRYYFVNFWQYYFHFWSQPYRMHINSLL--NYSFYFMGYLLRVLINPYAVKNQMLENSFLIDTVIKKFDTIIPIIPLIGSLSKAKFCTFSGHPISKPIWADLSDFDIIDRFGRICRNLSHYYSGS 426          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_GRAOF (Maturase K OS=Gratiola officinalis GN=matK PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 76/129 (58.91%), Postives = 93/129 (72.09%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+ KWK YLV  WQ HF     P R+ +N L    +++ FLGY S VR+N  +VRSQ LENSFLI+N++KK DT VPII LI +L +A+FCN LG PISK  W+D SDS++I RF  ICRNLSHYYSGS
Sbjct:  295 LIKKWKSYLVAFWQWHFSMWFHPRRISINQL--SNHSLEFLGYHSSVRMNPSVVRSQSLENSFLINNALKKFDTLVPIISLIAALAQAKFCNVLGDPISKPVWADLSDSNIIYRFGHICRNLSHYYSGS 421          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_PLAAE (Maturase K OS=Plantago argentea GN=matK PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 72/128 (56.25%), Postives = 93/128 (72.66%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWK YL   WQ HF     P R+  N LY   + + F+GYLS  R++  +VRSQ+LENSFLI+N++KKVD  +PI+ ++ SL KA+FCN LGHP SK  W+D SDS++I+RF  ICRN+SHYYSGS
Sbjct:  296 MNKWKCYLATFWQWHFSLWFHPRRISTNPLY--NHLLEFVGYLSSARMHPAMVRSQILENSFLINNAIKKVDALIPIMPMVTSLAKAQFCNLLGHPTSKPVWADLSDSNIINRFGHICRNISHYYSGS 421          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_LYOFE (Maturase K OS=Lyonia ferruginea GN=matK PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 75/129 (58.14%), Postives = 98/129 (75.97%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV +W+ +F   SQP R+ +N L     +++FLGYL  VRL   +VRSQM+ENSFLI+N++K+ D  VPI  L+ SL+KA+FCN LGHP SK +W++ SDS +I+RF RI RNLSHY+SGS
Sbjct:  295 LMNKWKYYLVNIWECYFYIWSQPRRIHINQL--SNNSLDFLGYLLSVRLKPSMVRSQMIENSFLIENAIKQFDIIVPITPLVTSLSKAKFCNVLGHPYSKPSWAESSDSDIIERFGRIYRNLSHYHSGS 421          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ILLOL (Maturase K OS=Illicium oligandrum GN=matK PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 78/129 (60.47%), Postives = 95/129 (73.64%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKY+LV  WQ HF   SQ GR+++N L    +   F GYLSG+RLN  +VR QM+ENSF+ID  +KK D  VPII LIGSL KA+FCN  G+PISKS  +D S+S +I+RF RICRNLSHY+SGS
Sbjct:  295 LMKKWKYHLVNFWQLHFYLWSQSGRIRINEL--SNHFFYFPGYLSGIRLNPSVVRGQMIENSFMIDTGIKKFDMIVPIIPLIGSLVKAKFCNISGYPISKSVRADSSNSDIINRFGRICRNLSHYHSGS 421          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CYPCL (Maturase K OS=Cypripedium calceolus GN=matK PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 75/129 (58.14%), Postives = 93/129 (72.09%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWK++LV  WQ +    SQP R+ +  LY   Y+ +FLGY S V  N L+VR+QMLENSFLI+   KK+DT  P+I LIGSL+KA+FC  LGHPISK  W+D SDS ++DRF RICRNL  Y+SGS
Sbjct:  304 LMKKWKFHLVNFWQSYLHFWSQPYRIHIKQLY--NYSFSFLGYFSSVLENHLVVRNQMLENSFLINIMTKKLDTIAPVISLIGSLSKAQFCTVLGHPISKPIWTDLSDSDILDRFCRICRNLCRYHSGS 430          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CARMI (Maturase K OS=Caryota mitis GN=matK PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 78/129 (60.47%), Postives = 92/129 (71.32%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWK +LV  WQ +F + SQP R+ +N L     +  FLGYLS V +N   VR+QMLENSFLID   KK DT VP+I LIGSL+KA+FC   GHPISK  W+D SD  +IDRF RICRNLSHY+SGS
Sbjct:  304 LMKKWKCHLVNFWQYYFNSWSQPYRIHINQL--SNCSFYFLGYLSSVLINLSAVRNQMLENSFLIDTVFKKFDTRVPVIPLIGSLSKAKFCTVSGHPISKPIWTDLSDCDIIDRFGRICRNLSHYHSGS 430          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_BARAL (Maturase K OS=Bartsia alpina GN=matK PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 76/128 (59.38%), Postives = 93/128 (72.66%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWK YL+  WQ HF     P R+ +N L    ++  FLGYLS +R+N  +VRSQ LEN+FLI+N++KKVDT VPII +I SL KA+FCN  GHPISK   +D SDS++IDRF  ICRN SHYYSGS
Sbjct:  296 MNKWKCYLITFWQWHFSLWFYPRRIYINQL--SNHSFAFLGYLSSLRMNPSVVRSQSLENAFLINNAIKKVDTLVPIIPMIASLAKAKFCNVFGHPISKPVRADLSDSNIIDRFGCICRNFSHYYSGS 421          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_TRISO4.184e-3858.91Maturase K OS=Trifolium spumosum GN=matK PE=3 SV=1[more]
MATK_MEDTR4.184e-3858.91Maturase K OS=Medicago truncatula GN=matK PE=3 SV=... [more]
MATK_LILLO4.184e-3859.69Maturase K OS=Lilium longiflorum GN=matK PE=3 SV=1[more]
MATK_GRAOF4.184e-3858.91Maturase K OS=Gratiola officinalis GN=matK PE=3 SV... [more]
MATK_PLAAE5.465e-3856.25Maturase K OS=Plantago argentea GN=matK PE=3 SV=1[more]
MATK_LYOFE5.465e-3858.14Maturase K OS=Lyonia ferruginea GN=matK PE=3 SV=1[more]
MATK_ILLOL5.465e-3860.47Maturase K OS=Illicium oligandrum GN=matK PE=3 SV=... [more]
MATK_CYPCL5.465e-3858.14Maturase K OS=Cypripedium calceolus GN=matK PE=3 S... [more]
MATK_CARMI5.465e-3860.47Maturase K OS=Caryota mitis GN=matK PE=3 SV=1[more]
MATK_BARAL5.465e-3859.38Maturase K OS=Bartsia alpina GN=matK PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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