CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_LIRCH (Maturase K OS=Liriodendron chinense GN=matK PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.542e-37
Identity = 78/129 (60.47%), Postives = 95/129 (73.64%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWK +LV  WQ HF   S+P R+ +N LY   ++  FLGYLS VRLN+ +V  QMLENSFLID S+ K +T VPII LIGS+ KA+FCN  GHPISKS  +D SDS +I+RF +I RNLSHY+SGS
Sbjct:  295 LMKKWKSHLVNFWQCHFYLWSRPDRIHINQLY--NHSFYFLGYLSSVRLNTSVVGIQMLENSFLIDTSINKFETLVPIISLIGSVVKAKFCNVSGHPISKSVRADSSDSDIINRFGQIYRNLSHYHSGS 421          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_LILRE (Maturase K OS=Lilium regale GN=matK PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.542e-37
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KW+YY V  WQ +F   SQP R+ +N L    Y+  F+GYL GV +N   V++QMLENSFLID  + K DT +PII LIGSL+KA+FC   GHPISK  W+D  D  +IDRF RICRNLSHY+SGS
Sbjct:  300 LMKKWRYYFVNFWQYYFHFWSQPYRMHINSLL--NYSFYFMGYLLGVLINPYAVKNQMLENSFLIDTVINKFDTIIPIIPLIGSLSKAKFCTFSGHPISKPIWADLLDFDIIDRFGRICRNLSHYHSGS 426          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_LILHE (Maturase K OS=Lilium henryi GN=matK PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.542e-37
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KW+YY V  WQ +F   SQP R+ +N L    Y+  F+GYL GV +N   V++QMLENSFLID  + K DT +PII LIGSL+KA+FC   GHPISK  W+D  D  +IDRF RICRNLSHY+SGS
Sbjct:  300 LMKKWRYYFVNFWQYYFHFWSQPYRMHINSLL--NYSFYFMGYLLGVLINPYAVKNQMLENSFLIDTVINKFDTIIPIIPLIGSLSKAKFCTFSGHPISKPIWADLLDFDIIDRFGRICRNLSHYHSGS 426          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_AUSBL (Maturase K OS=Austrosteenisia blackii GN=matK PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.542e-37
Identity = 76/129 (58.91%), Postives = 91/129 (70.54%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK Y + LWQ HF   SQP  + +  L   K++  FLGY   V+LN  +VRSQML+NSFL +  MKK+DT VPII LI SL KA+FCN LGHPISK  W+D SD  +IDRF+ ICRN S YY+GS
Sbjct:  293 LMNKWKSYFIHLWQCHFDVWSQPRTIHIKQL--SKHSFYFLGYFLNVQLNLSVVRSQMLQNSFLTEIVMKKLDTIVPIILLIRSLAKAKFCNVLGHPISKPVWADLSDFDIIDRFLWICRNFSQYYNGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CASLN (Maturase K OS=Castilleja linariifolia GN=matK PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.626e-37
Identity = 75/128 (58.59%), Postives = 93/128 (72.66%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWK YL+  WQ HF     P R+ +N L    ++  FLGY S +R+N  +VRSQ+LENSFLI+N++KKVDT +PII LI SL KA+FCN  GHPISK   +D SDS++IDRF  ICRN SHY+SGS
Sbjct:  295 MNKWKCYLITFWQWHFSLWFYPRRIYINQL--SNHSFEFLGYQSSLRMNPSVVRSQILENSFLINNAIKKVDTFIPIIPLIVSLAKAKFCNVXGHPISKPVRADLSDSNIIDRFGCICRNFSHYHSGS 420          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_BYBLI (Maturase K OS=Byblis liniflora GN=matK PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.626e-37
Identity = 75/129 (58.14%), Postives = 90/129 (69.77%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWK Y V  WQ +F     P R+ +  L     +  FLGYLS VR+N  +VRSQ+L  SFLI+N +KK DT VP I +I SL KA+FCN LGHPISK  W+D SDSH+IDRF RICRN+SHY+SGS
Sbjct:  298 LMKKWKCYFVTFWQWYFSLWFHPKRIYIKQL--SNQSFYFLGYLSSVRMNFSVVRSQILGKSFLINNVIKKFDTLVPTIPMIASLAKAKFCNVLGHPISKPVWADLSDSHIIDRFWRICRNISHYHSGS 424          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_APOAN (Maturase K OS=Apocynum androsaemifolium GN=matK PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 4.626e-37
Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK YLV  WQ +F       R  +  +Y   Y+++F+GYLS VR   L VRSQML+N+FLI N + K+DT VPII LIGS  KA+FCN LGHPISK   +D SDS ++DRF RICRNLSHYYSGS
Sbjct:  293 LMNKWKSYLVNFWQCNFDLWVHSRRAYIKQVY--NYSLDFMGYLSIVRQTPLTVRSQMLKNAFLIKNPINKLDTLVPIIPLIGSFAKAKFCNLLGHPISKPVRTDLSDSDIMDRFGRICRNLSHYYSGS 419          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_TRISM (Maturase K OS=Trifolium semipilosum GN=matK PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 74/129 (57.36%), Postives = 92/129 (71.32%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK+Y + LWQ  F   SQP  + +N L   +++I  LGY S VRLN  +VRSQML+N+FLI+   KK+D  VPII +I SL KA+FCN LGHPISK  W+D SD  +I+RF+RIC NL HYY GS
Sbjct:  292 LMNKWKHYFIHLWQCFFDVWSQPRTININQL--SEHSIQLLGYFSNVRLNRSVVRSQMLQNTFLIEIVSKKLDIIVPIIPIIRSLAKAKFCNVLGHPISKPVWADSSDFDIIERFLRICSNLCHYYHGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_NEPDI (Maturase K OS=Nepenthes distillatoria GN=matK PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKYYLV  WQ  F   SQP R+ +N L    + ++F+ +LS VRLN  +VR QMLE SF+IDN++   DT VP I +IGS  KA+FCN  GHPISK  W+  SDS +IDRF RICR+LSHYYSGS
Sbjct:  292 LMIKWKYYLVNFWQCSFSVWSQPRRIYINXLX--NHXLDFMXFLSSVRLNPSVVRIQMLEKSFIIDNAINTFDTRVPNIPMIGSFAKAKFCNIFGHPISKPVWAYLSDSDIIDRFGRICRSLSHYYSGS 418          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_BOWVO (Maturase K OS=Bowiea volubilis GN=matK PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 76/129 (58.91%), Postives = 90/129 (69.77%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            +M KWKY+ V  WQ +F   +QP R  +N L        FLGYLS +  NS  VR+QMLENSFLID   KK DT VP+I LIGSL+KA+FC   GHPISK  W+D SDS ++DRF RICRNLSHY+SGS
Sbjct:  298 MMKKWKYHFVNFWQYYFHFWTQPYRXHINQL--SNSFFYFLGYLSXLLRNSSAVRNQMLENSFLIDTVTKKFDTIVPVIFLIGSLSKAKFCTVSGHPISKPIWADLSDSDILDRFGRICRNLSHYHSGS 424          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_LIRCH3.542e-3760.47Maturase K OS=Liriodendron chinense GN=matK PE=3 S... [more]
MATK_LILRE3.542e-3758.14Maturase K OS=Lilium regale GN=matK PE=3 SV=1[more]
MATK_LILHE3.542e-3758.14Maturase K OS=Lilium henryi GN=matK PE=2 SV=1[more]
MATK_AUSBL3.542e-3758.91Maturase K OS=Austrosteenisia blackii GN=matK PE=3... [more]
MATK_CASLN4.626e-3758.59Maturase K OS=Castilleja linariifolia GN=matK PE=3... [more]
MATK_BYBLI4.626e-3758.14Maturase K OS=Byblis liniflora GN=matK PE=3 SV=1[more]
MATK_APOAN4.626e-3759.69Maturase K OS=Apocynum androsaemifolium GN=matK PE... [more]
MATK_TRISM6.042e-3757.36Maturase K OS=Trifolium semipilosum GN=matK PE=3 S... [more]
MATK_NEPDI6.042e-3758.14Maturase K OS=Nepenthes distillatoria GN=matK PE=3... [more]
MATK_BOWVO6.042e-3758.91Maturase K OS=Bowiea volubilis GN=matK PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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