CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_MARSC (Maturase K OS=Marathrum schiedeanum GN=matK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 68/129 (52.71%), Postives = 97/129 (75.19%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYY V L+Q HF    Q  ++ +N LY  K++ + +GYL  ++ N  ++RSQML+N+F+I+N+MKK+D  VPII +I SL+K +FCN +GHP+SK TW+D  DS +IDRFVR+C  +S++YSGS
Sbjct:  294 LMNKWKYYFVTLFQNHFDVWFQTDKIHINPLY--KHSFHCVGYLLSLKWNPSVIRSQMLQNAFIIENTMKKMDILVPIILMIDSLSKMKFCNKIGHPVSKPTWTDLLDSDIIDRFVRLCNKISYFYSGS 420          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_LYOLI (Maturase K OS=Lyonia ligustrina GN=matK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 75/129 (58.14%), Postives = 94/129 (72.87%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV  W+ +F   SQP R+ +N L     +++FLGYL  VRL   +VRSQM+ENS +I+N+ K+ DT VPI  L  SL+KA+FCN LGHPISK  W+  SDS +I+RF RI RNLSHY+SGS
Sbjct:  295 LMNKWKYYLVNFWECYFYIWSQPRRIHINQL--SNNSLDFLGYLLSVRLKPSMVRSQMIENSCIIENASKQFDTLVPITPLFRSLSKAKFCNMLGHPISKPVWAASSDSDIIERFGRIYRNLSHYHSGS 421          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_IRIPS (Maturase K OS=Iris pseudacorus GN=matK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 74/129 (57.36%), Postives = 91/129 (70.54%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKY  V LWQ +F    Q  R+ +N L    Y+  FLGYLS +  NS +VR+QMLENSFL+D    K +T VP+I LIGSL+KA+FC  LGHPISK  W+D  DS +I+RF R+CRNLSHY+SGS
Sbjct:  313 LMKKWKYNFVNLWQYYFNFWYQSYRIHINQL--SNYSFYFLGYLSSLLKNSSMVRNQMLENSFLVDTVTNKFETLVPVIFLIGSLSKAQFCTVLGHPISKPIWADLPDSEIIERFGRMCRNLSHYHSGS 439          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_IRICR (Maturase K OS=Iris cristata GN=matK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKY  V LWQ +F    Q  R+ +N L    Y+  FLGYLS +  NSL VR+QMLENSFL+D    K +T VP+I LIGSL+KA+FC   GHPISK  W+D SDS +I+RF R+CRNLSHY+SGS
Sbjct:  307 LMKKWKYNFVNLWQYYFHFWYQSYRIHINQL--SNYSFYFLGYLSSLLKNSLTVRNQMLENSFLMDTVTNKFETIVPVIFLIGSLSKAQFCTVSGHPISKPIWADLSDSEIIERFGRMCRNLSHYHSGS 433          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CARAB (Maturase K OS=Caragana arborescens GN=matK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 74/129 (57.36%), Postives = 93/129 (72.09%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            +MNKWK+Y + LWQ  F   SQPG + +N L   +++ + LGY S VRLN  +VRSQML+N+FLI+   KK+D  VPII LI SL KA+FCN L  PISK  W D SD  +I+RF+RICRNLSHYY+GS
Sbjct:  290 VMNKWKHYCIHLWQCFFDIWSQPGTIHINQL--SEHSFHLLGYFSNVRLNRSVVRSQMLQNTFLIEIVSKKLDIIVPIIPLIRSLAKAKFCNVLRDPISKPVWGDSSDFDIIERFLRICRNLSHYYNGS 416          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ARUDO (Maturase K OS=Arundo donax GN=matK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 79/129 (61.24%), Postives = 90/129 (69.77%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L  KWK YLV   Q  F    QP R+ LN L       +FLGYLS V +N+LLVR+QMLENSFLID  MKK DT VP I LIGSL+KA+FC   GHPISK  W+D SDS ++DRF RICRNL HY+SGS
Sbjct:  297 LKKKWKSYLVNFSQYFFSFWIQPQRICLNQLT--NSCFDFLGYLSSVPINTLLVRNQMLENSFLIDTRMKKFDTTVPAIPLIGSLSKAQFCTGSGHPISKPVWTDLSDSDILDRFGRICRNLFHYHSGS 423          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_VICFA (Maturase K OS=Vicia faba GN=matK PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 74/129 (57.36%), Postives = 93/129 (72.09%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK++ + LWQ  F   SQP  + +N L   +++   LGY S VRLN  +VRSQML+N+FLI+  +KK+D  VPII LI SL KA+FCN LG PISK  W+D SD  +IDRF+ ICRNLSHYY+GS
Sbjct:  290 LMNKWKHFFIHLWQCFFDVWSQPRMININPL--SEHSFQLLGYFSNVRLNRSVVRSQMLQNTFLIEIVIKKLDIIVPIIPLIRSLAKAKFCNVLGQPISKPVWADSSDFDIIDRFLGICRNLSHYYNGS 416          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_SORBI (Maturase K OS=Sorghum bicolor GN=matK PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 77/129 (59.69%), Postives = 90/129 (69.77%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L  KWK YLV   Q  F   +QP R++LN L       +FLGYLS V +N+LLVR+QMLENSFLID  MKK DT VP   L+GSL+KA+FC   GHPISK  W+D SD  ++DRF RICRNL HYYSGS
Sbjct:  297 LKKKWKSYLVNFSQYFFSFWTQPQRIRLNQLT--NSCFDFLGYLSSVPINTLLVRNQMLENSFLIDTRMKKFDTTVPATPLVGSLSKAQFCTGSGHPISKPVWTDLSDWDILDRFGRICRNLFHYYSGS 423          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_OCIBA (Maturase K OS=Ocimum basilicum GN=matK PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 70/128 (54.69%), Postives = 94/128 (73.44%), Query Frame = -1
Query:   33 MNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 416
            MNKWK+YLV  W+ HF     P R+ +N     ++++   GYLS V+ +  +VRSQ+LEN+FLI+N+++K+DT VPII LI  L K +FCN LGHP SK  W+D SDS++IDRF RICRN+SHY+SGS
Sbjct:  292 MNKWKFYLVTSWEWHFLVWFHPRRICINQF--SRHSLEIFGYLSNVQTDPSVVRSQILENAFLINNAIRKLDTLVPIIPLIAKLAKEKFCNVLGHPSSKPIWADLSDSNIIDRFGRICRNISHYHSGS 417          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_TRIBU (Maturase K OS=Trifolium burchellianum GN=matK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 73/129 (56.59%), Postives = 90/129 (69.77%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKW +Y + LWQ  F   SQP  + +N L   +++   LGY S VRLN  +VRSQML+N+FLI+   KK+D  VP I LI SL KA+FCN LGHPISK  W+D SD  +I+RF+RICRNL HYY GS
Sbjct:  290 LMNKWNHYFIHLWQCFFDVWSQPRTININQL--SEHSFQLLGYFSNVRLNRSVVRSQMLQNTFLIEIVSKKLDIIVPFIPLIRSLAKAKFCNVLGHPISKPVWADSSDFDIIERFLRICRNLCHYYHGS 416          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_MARSC1.346e-3652.71Maturase K OS=Marathrum schiedeanum GN=matK PE=3 S... [more]
MATK_LYOLI1.346e-3658.14Maturase K OS=Lyonia ligustrina GN=matK PE=3 SV=1[more]
MATK_IRIPS1.346e-3657.36Maturase K OS=Iris pseudacorus GN=matK PE=3 SV=1[more]
MATK_IRICR1.346e-3658.14Maturase K OS=Iris cristata GN=matK PE=3 SV=1[more]
MATK_CARAB1.346e-3657.36Maturase K OS=Caragana arborescens GN=matK PE=3 SV... [more]
MATK_ARUDO1.346e-3661.24Maturase K OS=Arundo donax GN=matK PE=3 SV=1[more]
MATK_VICFA1.758e-3657.36Maturase K OS=Vicia faba GN=matK PE=3 SV=1[more]
MATK_SORBI1.758e-3659.69Maturase K OS=Sorghum bicolor GN=matK PE=2 SV=3[more]
MATK_OCIBA1.758e-3654.69Maturase K OS=Ocimum basilicum GN=matK PE=3 SV=1[more]
MATK_TRIBU2.296e-3656.59Maturase K OS=Trifolium burchellianum GN=matK PE=3... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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