CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_TRACE (Maturase K OS=Trachelium caeruleum GN=matK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 72/129 (55.81%), Postives = 90/129 (69.77%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            +MNKW YY V  WQ +F   SQP R+ +N L    ++++FL Y S VR  +  VR+QML   FL DN++ K DT VPII +IGSL K++FCN  GHPISK+ W D SDS +IDRF RI RNLSHY+SGS
Sbjct:  302 VMNKWNYYFVNFWQSYFYLWSQPRRIHINQL--SNHSLDFLAYFSSVRRRTSTVRNQMLSKLFLSDNAINKFDTFVPIIPMIGSLAKSKFCNRAGHPISKAVWLDLSDSDIIDRFGRIARNLSHYHSGS 428          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_SPIPO (Maturase K OS=Spirodela polyrrhiza GN=matK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 76/129 (58.91%), Postives = 89/129 (68.99%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWK Y V LWQ HF   SQP R+ +N      ++  FLGYLS V  N   V +QMLENSFLI+   KK +T V II +IGSL+KA+FCN  G+PISK  W+D SD  +IDRF RICRNLSHYYSGS
Sbjct:  298 LMKKWKSYFVNLWQCHFHFWSQPSRIHINQF--SHFSFYFLGYLSSVPRNRSSVTTQMLENSFLIETVTKKFETMVSIIPMIGSLSKAKFCNLSGNPISKPVWADLSDLDIIDRFGRICRNLSHYYSGS 424          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_DISSE (Maturase K OS=Disporum sessile GN=matK PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 73/129 (56.59%), Postives = 93/129 (72.09%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWK YLV  WQ +F   S P R+Q+N L    ++  FLGYLS V +N L V+++ML++SFLID   KK DT +P+I LIGSL+KA+FC   G+P SK+ W+D SDS ++ RF RICRNLSHYYSGS
Sbjct:  299 LMKKWKCYLVNFWQYYFHFLSYPYRIQINQLK--NHSFFFLGYLSSVLINPLAVKNKMLDHSFLIDTVTKKFDTTIPVIPLIGSLSKAKFCTVSGYPSSKTIWADLSDSDIVGRFGRICRNLSHYYSGS 425          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_PILTE (Maturase K OS=Pillansia templemannii GN=matK PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.999e-36
Identity = 76/129 (58.91%), Postives = 92/129 (71.32%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKY  V LWQ +F    Q  R+ +N L   K++ +FLGYLS +  NS  VR+QML+NSFLID    K DTAVP+I LI SL+KA+FC   GHPISK  W+D SDS +I+RF RICRNLSHY+SGS
Sbjct:  309 LMKKWKYNFVNLWQYYFHFWYQSYRIHINQL--SKHSFHFLGYLSSLLKNSSTVRNQMLDNSFLIDTLTTKFDTAVPVIFLIVSLSKAQFCTVSGHPISKPIWTDLSDSGIIERFGRICRNLSHYHSGS 435          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_HELBU (Maturase K OS=Helonias bullata GN=matK PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.999e-36
Identity = 72/129 (55.81%), Postives = 91/129 (70.54%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+ KWK YLV  WQ +    S+P R+ +N L    Y+  F+GY+S V +N   V++QMLEN FL+D   KK DT VP+I LIGSL+KA+FC   GHPISK  W+D SDS +I+RF RICRNLSHY+SGS
Sbjct:  299 LIKKWKCYLVNFWQYYLYFWSKPYRIHINQL--SNYSFYFMGYISSVLINPSAVKNQMLENLFLVDTVTKKFDTIVPVIPLIGSLSKAKFCTVAGHPISKPVWADLSDSDIIERFGRICRNLSHYHSGS 425          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_TRIUN (Maturase K OS=Trillium undulatum GN=matK PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.917e-36
Identity = 72/129 (55.81%), Postives = 92/129 (71.32%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+ KWK YLV  WQ +F   S+P R+ +N      Y+  FLGY+S V +N   V++QMLEN +L+D   +K DT VP+I LIGSL+KA+FC  LGHPISK  W++ SDS +IDRF RICRNLSHY+SGS
Sbjct:  299 LIKKWKCYLVNFWQYYFHFWSKPYRIHINPF--SNYSFYFLGYISSVLINPSAVKNQMLENFYLVDTLTQKFDTIVPVIPLIGSLSKAKFCTILGHPISKPIWAELSDSDIIDRFGRICRNLSHYHSGS 425          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ANOMA (Maturase K OS=Anomochloa marantoidea GN=matK PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.917e-36
Identity = 75/129 (58.14%), Postives = 89/129 (68.99%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWK YL   WQ +F    QP R+Q   L       +FLGYLS V  N L+VR+QMLEN+FLID  +KK+DT VP I LIGSL+KA+FC   GHPISK  W+D SD  ++DRF RICRN+ HYYSGS
Sbjct:  297 LMKKWKCYLANFWQYYFHFWIQPRRIQQKPL--ANSCFDFLGYLSSVTRNPLVVRNQMLENAFLIDTRIKKLDTIVPAISLIGSLSKAQFCTGSGHPISKPIWTDLSDWDILDRFGRICRNIFHYYSGS 423          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_WOLGL (Maturase K OS=Wolffiella gladiata GN=matK PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.115e-36
Identity = 71/129 (55.04%), Postives = 89/129 (68.99%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+ KWK Y + LWQ HF   SQP R+ +N      ++  FLGYLS V +N   ++SQMLENSFLID    K  T + II +IGSL +A+FCN  G+PISK  W+D SDS +IDRF R+CRN+SHYYSGS
Sbjct:  300 LLKKWKSYFLNLWQCHFHFWSQPSRIHINQF--AHFSFYFLGYLSSVEMNPSSMKSQMLENSFLIDTVTPKFQTLIAIIPMIGSLARAKFCNLSGNPISKPVWTDLSDSEIIDRFGRLCRNISHYYSGS 426          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_TRIPU (Maturase K OS=Trillium pusillum GN=matK PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.115e-36
Identity = 72/129 (55.81%), Postives = 92/129 (71.32%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+ KWK YLV  WQ +F   S+P R+ +N      Y+  FLGY+S V +N   V++QMLEN +L+D   +K DT VP+I LIGSL+KA+FC  LGHPISK  W++ SDS +IDRF RICRNLSHY+SGS
Sbjct:  299 LIKKWKCYLVNFWQYNFHFWSKPYRIHINPF--SNYSFYFLGYISSVLINPSAVKNQMLENFYLVDTLTQKFDTIVPVIPLIGSLSKAKFCTILGHPISKPIWAELSDSDIIDRFGRICRNLSHYHSGS 425          
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_TRIMC (Maturase K OS=Trillium maculatum GN=matK PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.115e-36
Identity = 72/129 (55.81%), Postives = 92/129 (71.32%), Query Frame = -1
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+ KWK YLV  WQ +F   S+P R+ +N      Y+  FLGY+S V +N   V++QMLEN +L+D   +K DT VP+I LIGSL+KA+FC  LGHPISK  W++ SDS +IDRF RICRNLSHY+SGS
Sbjct:  301 LIKKWKCYLVNFWQYNFHFWSKPYRIHINPF--SNYSFYFLGYISSVLINPSAVKNQMLENFYLVDTLTQKFDTIVPVIPLIGSLSKAKFCTILGHPISKPIWAELSDSDIIDRFGRICRNLSHYHSGS 427          
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_TRACE2.296e-3655.81Maturase K OS=Trachelium caeruleum GN=matK PE=3 SV... [more]
MATK_SPIPO2.296e-3658.91Maturase K OS=Spirodela polyrrhiza GN=matK PE=3 SV... [more]
MATK_DISSE2.296e-3656.59Maturase K OS=Disporum sessile GN=matK PE=3 SV=2[more]
MATK_PILTE2.999e-3658.91Maturase K OS=Pillansia templemannii GN=matK PE=3 ... [more]
MATK_HELBU2.999e-3655.81Maturase K OS=Helonias bullata GN=matK PE=3 SV=1[more]
MATK_TRIUN3.917e-3655.81Maturase K OS=Trillium undulatum GN=matK PE=3 SV=1[more]
MATK_ANOMA3.917e-3658.14Maturase K OS=Anomochloa marantoidea GN=matK PE=3 ... [more]
MATK_WOLGL5.115e-3655.04Maturase K OS=Wolffiella gladiata GN=matK PE=3 SV=... [more]
MATK_TRIPU5.115e-3655.81Maturase K OS=Trillium pusillum GN=matK PE=3 SV=1[more]
MATK_TRIMC5.115e-3655.81Maturase K OS=Trillium maculatum GN=matK PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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