CB305000

Overview
NameCB305000
Unique NameCB305000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_PHAVU (Maturase K OS=Phaseolus vulgaris GN=matK PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 5.115e-36
Identity = 69/129 (53.49%), Postives = 94/129 (72.87%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+NKWKYY + LWQ +F   + P  + +N L   +Y+ +FLGY   +  N  +VRSQML+NSFLI   +KK+DT +PII L+ SL K +FCN +GHPISK  W++FSD +++DRF+RICRN SHYY+GS
Sbjct:  292 LINKWKYYFLYLWQCYFDIWAGPETIYINQL--SQYSFHFLGYFLSIPQNLSVVRSQMLKNSFLIKIVIKKLDTIIPIIPLMRSLAKTKFCNVMGHPISKPVWANFSDFYILDRFLRICRNFSHYYNGS 418
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_MOLCA (Maturase K OS=Molinia caerulea GN=matK PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.115e-36
Identity = 77/129 (59.69%), Postives = 90/129 (69.77%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L  KWK YLV   Q  F   +QP R++LN L       +FLGYLS V +N+LLVR+QMLENSFLID  MKK DT VP   LIGSL+KA+FC   GHPISK  W+D SD  ++DRF RICRNL HY+SGS
Sbjct:  297 LKKKWKSYLVNFSQYFFSFWTQPQRIRLNQLT--NSCFDFLGYLSSVPINTLLVRNQMLENSFLIDTRMKKFDTTVPATPLIGSLSKAQFCTGSGHPISKPVWTDLSDWDILDRFGRICRNLFHYHSGS 423
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_IRIOR (Maturase K OS=Iris orientalis GN=matK PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.115e-36
Identity = 74/129 (57.36%), Postives = 91/129 (70.54%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKY  V LWQ +F    Q  R+ +N L    ++  FLGYLS +  NS  VR+QMLENSF+ID   KK +T VP+I LIGSL+KA+FC   GHPISK  W+D SDS +I+RF R+CRNLSHY+SGS
Sbjct:  309 LMKKWKYNFVNLWQYYFHFWYQSYRIHINQL--SNHSFYFLGYLSSLPRNSSTVRNQMLENSFIIDTVTKKFETIVPVIFLIGSLSKAQFCTVSGHPISKPIWADLSDSEIIERFGRMCRNLSHYHSGS 435
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CURLO (Maturase K OS=Curcuma longa GN=matK PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.115e-36
Identity = 73/129 (56.59%), Postives = 92/129 (71.32%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKY+LV  WQ +F   SQP R+ +  L    Y+  FLGY S V++NS +VR+QMLENSFL+D   KK DT +PII LI SL+KA+FC   G+PISK  W+D +D  +I+RF RICR LSHY+SGS
Sbjct:  298 LMKKWKYHLVNFWQYYFHFWSQPYRIDIKKL--SNYSFYFLGYFSSVQINSSMVRNQMLENSFLMDTLTKKFDTIIPIIPLIRSLSKAQFCTVSGYPISKPIWTDLADCDIINRFGRICRKLSHYHSGS 424
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_BELCH (Maturase K OS=Belamcanda chinensis GN=matK PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.115e-36
Identity = 74/129 (57.36%), Postives = 90/129 (69.77%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM KWKY  V LWQ +F    Q  R+ +N L    Y+  F+GYLS +  NS  VR+QMLENSFLID    K +T VP+I LIGSL+KA+FC   GHPISK  W+D SDS +I+RF R+CRNLSHY+SGS
Sbjct:  309 LMKKWKYNFVNLWQYYFHFWYQSYRIHINQL--SNYSFYFMGYLSSLLKNSSTVRNQMLENSFLIDTVTNKFETIVPVIFLIGSLSKAQFCTVSGHPISKPIWADLSDSEIIERFGRMCRNLSHYHSGS 435
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_VIGUN (Maturase K OS=Vigna unguiculata GN=matK PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.681e-36
Identity = 71/129 (55.04%), Postives = 92/129 (71.32%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+NKWKYY + LWQ HF   +    + +N L   +Y+ +FLGY   + LN  +VRSQML+NSFLI   +KK+DT VPII L+ SL K +FCN +GHPISK  W++ SD  +IDRF+RICRN SHYY+GS
Sbjct:  292 LINKWKYYFIYLWQCHFDIWAGLETIYINEL--SQYSFHFLGYFLSIPLNLSVVRSQMLQNSFLIKIVIKKLDTIVPIIPLMRSLAKTKFCNVMGHPISKPVWANLSDFDIIDRFLRICRNFSHYYNGS 418
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_LENER (Maturase K OS=Lens ervoides GN=matK PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.681e-36
Identity = 73/129 (56.59%), Postives = 92/129 (71.32%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWK+Y + LWQ  F   SQP  + +N L   +++   LGY S VRLN  +VRSQML+N+FLI+  +KK+D  VPI+ LI SL KA+FCN LG PISK  W+D SD  +IDRF+RI RNLSHYY GS
Sbjct:  294 LMDKWKHYFIHLWQCFFDVWSQPRTININPL--SEHSFKLLGYFSNVRLNRSVVRSQMLQNTFLIEIVIKKIDIIVPILPLIRSLAKAKFCNVLGQPISKPVWADSSDFDIIDRFLRISRNLSHYYKGS 420
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_LENCU (Maturase K OS=Lens culinaris GN=matK PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.681e-36
Identity = 73/129 (56.59%), Postives = 92/129 (71.32%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LM+KWK+Y + LWQ  F   SQP  + +N L   +++   LGY S VRLN  +VRSQML+N+FLI+  +KK+D  VPI+ LI SL KA+FCN LG PISK  W+D SD  +IDRF+RI RNLSHYY GS
Sbjct:  294 LMDKWKHYFIHLWQCFFDVWSQPRTININPL--SEHSFKLLGYFSNVRLNRSVVRSQMLQNTFLIEIVIKKIDIIVPILPLIRSLAKAKFCNVLGQPISKPVWADSSDFDIIDRFLRISRNLSHYYKGS 420
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_LATTI (Maturase K OS=Lathyrus tingitanus GN=matK PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.681e-36
Identity = 73/129 (56.59%), Postives = 92/129 (71.32%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWK+Y + LWQ  F   SQP  + +N L   +++   LGY   VRLN  +VRSQML+N+FLI+  ++ +D  VPII LI SL KA+FCN LG PISK  W+D SD  +IDRF+RICRNLSHYY+GS
Sbjct:  293 LMNKWKHYFIHLWQCFFDLWSQPRMININPL--SEHSFQLLGYFLNVRLNRSVVRSQMLQNTFLIEMVIQNLDIIVPIIPLIRSLAKAKFCNILGEPISKPVWADSSDFDIIDRFLRICRNLSHYYNGS 419
[Close]
BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_VIGMU (Maturase K OS=Vigna mungo GN=matK PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 70/129 (54.26%), Postives = 92/129 (71.32%), Query Frame = -1 
Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            L+NKWKYY + LWQ HF   +    + +N L   +Y+ +FLGY   + LN  +VRSQML+NSFLI   +KK+DT VPII L+ SL K +FCN +GHPISK  W++ SD  ++DRF+RICRN SHYY+GS
Sbjct:  292 LINKWKYYFIYLWQCHFDIWAGLETIYINEL--SQYSFHFLGYFLSIPLNLSVVRSQMLQNSFLIQIVIKKLDTIVPIIPLMRSLAKTKFCNVMGHPISKPVWANLSDFDILDRFLRICRNFSHYYNGS 418
The following BLAST results are available for this feature:
BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MATK_PHAVU5.115e-3653.49Maturase K OS=Phaseolus vulgaris GN=matK PE=3 SV=2[more]
MATK_MOLCA5.115e-3659.69Maturase K OS=Molinia caerulea GN=matK PE=3 SV=1[more]
MATK_IRIOR5.115e-3657.36Maturase K OS=Iris orientalis GN=matK PE=3 SV=1[more]
MATK_CURLO5.115e-3656.59Maturase K OS=Curcuma longa GN=matK PE=3 SV=1[more]
MATK_BELCH5.115e-3657.36Maturase K OS=Belamcanda chinensis GN=matK PE=3 SV... [more]
MATK_VIGUN6.681e-3655.04Maturase K OS=Vigna unguiculata GN=matK PE=3 SV=1[more]
MATK_LENER6.681e-3656.59Maturase K OS=Lens ervoides GN=matK PE=3 SV=1[more]
MATK_LENCU6.681e-3656.59Maturase K OS=Lens culinaris GN=matK PE=3 SV=1[more]
MATK_LATTI6.681e-3656.59Maturase K OS=Lathyrus tingitanus GN=matK PE=3 SV=... [more]
MATK_VIGMU8.725e-3654.26Maturase K OS=Vigna mungo GN=matK PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA
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